Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02875 ATGGAGGAAAGTCTACTACAGAAGCATGAAGAAGAAAGTGAAGAAAAAAGAGTTACATGGAGTGGTTTCAGTGAAGAAATGAGAAGGATAAGTGTTGTAGCAGGGCCTATGGTGGCTGTGGTTTCTTCCCAATTTTTGTTGCAAATTGTTTCAACCATGATAGTTGGTCATTTGGGTGAACTCTATCTCTCTAGCGCCGCCTTAGCCATTTCCCTAGCTGGGGTCTCTGGTTTCAGTCTTCTTATGGGAATGGCCAGTGGACTAGAGACCATTTGTGGACAGGCTTATGGAGCTCAGCAATATCAAAGAATTGGAGTGCAAACATACACTGCCATTTTCTCTCTCATATTGATTTGTATTCCCCTGTCTGTCCTTTGGGTCAACATGGAAAACATACTAGTTTTCATTGGCCAGGACCCTCTAATTTCACATGAAGCAGGGAAATTCATAATTTGGCTTCTACCAGCACTTTTTGCTTATGCAATTCTACAGTCATTAGTTAGATATTTCCAAATCCAAAGTATGCTTCTTCCCATGCTTGCAAGTTCTTGTGTCACACTCATTATTCATATTCCTCTTTGTTGGGCCCTGGTGTTCAAAACAAGGCTGAATAATGTTGGTGGAGCATTAGCCGTTAGCATTTCAATGTGGTCAAATGTGATTATTCTTGGATCATACATGAGATACTCTTCTGCGTGTGCAAAAACCCGTGCACCAATTTCTTTGGAGGTCTTTAAAGGAATGCAGGAGTTCTTTCGTTTTGCCGTCCCTTCGGCAGTAATGGTTTGCCTTGAATGGTGGTCATTTGAGCTGCTTGTATTGCTGTCAGGGCTGTTACCAAATCCACAACTTGAAACTTCAGTTCTATCCGTTTGTCTAAACACTATTGCAACTCTTTATACAATACCCTTTGGCATTGGTGCTGCAGCAAGCACAAGGGTTTCAAATGAATTAGGAGCTGGAAATCCACATGCTGCCCGTGTTGCTGTGTTAGCCGCAATGTCGCTTGCAGTCATTGAGACAAGTGTAGTAAGCGCAGCACTCTTTGCCTGCCGCCATGTTTTTGGTTATATCTTCAGCAATGAGAAGGAAGTTATTGATTATGTCACTTTCATGGCCCCTCTCGTATGTATATCTGTTATACTAGACAGCATACAAGGTGTTCTCACAGGAATTGCTAGAGGTTGTGGATGGCAACATTTAGGAGTTTATGTGAATCTTGGGGCTTTCTACCTTTGTGGGATTCCAGTGGCTGCTATATTAGCATTTGTGGTGCGAGTGGGGGGAAAAGGACTTTGGATTGGAATACAATGTGGTTCTTTTGTTCAAACTATTCTACTTTCTGTCATAACCAGTTGCATAAATTGGGAAAAGCAGGCCATCAATGCAAGAAAGAGGTTATTCGATGATGAATTGTCAGCAGAAAATATATTGGCAAACGCCATAGCTCTACTGCTATTTGTATCAGTCTTAAAAAGGTGCAACTTTTCTATGACCCTTAGAGAGAGTATGGAAAAGGGTCTCTTAGAGAAGAAGGAAGAGGTGAAAGACGGTGGTTCAGGCATAATAAGATGGAGTGTGTTTGGTGAAGAGGTGAAAAGGGTTGGTTATTTAGCAGGTCCCATGATTGGTGTGAATCTGTCACAGTATTTTCTACAAATAATATCAATGATGATGGTTGGTCGCTTGGGCAAGCTTGCTCTCTCCAGCACAGCCATTGCCATCTCTCTCTGTAATGTCTCTGGCTTCAGTGTCATTTTTGGAATGTCATGCGCTTTGGAAACTCGATGTGGGCAAGCATATGGAGCACGGCAATACAGAAAATTTGGTGTTCAGATTTACACTGCCATTGTCTCTCTTGCTTTTGTGTGTCTTCCTCTGACTTTTTTGTGGATGAACTTGGGGAACCTGCTCATTTTACTTGGCCAAGATCCTTTGGTTTCTTTAGAAGCTGGGAAATTTGCTTTGTGCATGATCCCTGCTCTCTTTGCTTATGCAACACTTCAGTCTTTGGTTCGATTCTTTTTTATGCAAAGTTTGATGAGTCCTCTTGTCATAAGTTCCTTCATTACTCTTTGCTTCCATGTGGCATTCAGTTGGTTTATGGTCTTTAAATCAGGACTTGGTAACTTAGGAGCAGCATTCTCTATTGGTACTTCATACTGGCTGAATGTGACTTTACTTGGATTATATATGAAATTCTCTACTCAGTGTGAAAAGACTCGAGTCCCGATTTCAATGGAACTGTTCCATGGGATTGGAGAATTCATCCGCTATGCCATTCCTTCAGCTGGAATGATTTGTTTAAACATCAGCGCAACAATCTACACCATCCCAGAATCTATTGGATCAGCGGCAAGTGCTAGAGTTTCGAATGCATTAGGAGCTGGAAGTCCACAATCAGCACAAGTATCTGCTTATGCTTCCATGACACTGGCTGCTTCCGAGGCCCTTCTGGTGAGCTCAATCATTTTTGCTAGCAGGCAGATTTTAGGTTATGCATTTAGCAATGATGAGGACGTGGTGTTTTATGTCACAAATATGGTTCCTCTCTTAAGTCTCTCTCTTATACTGGACAGTTTACATGGTACTCTTTCAGGTATTGCCAGAGGATGTGGGTGGCAGCACTTAGGAGCATATGTAAACCTTGGAGCCTATTATGGTTTTGGAATCCCAATTGCTGCTATATTGGGTTTCTAG 2700 0.42 MEESLLQKHEEESEEKRVTWSGFSEEMRRISVVAGPMVAVVSSQFLLQIVSTMIVGHLGELYLSSAALAISLAGVSGFSLLMGMASGLETICGQAYGAQQYQRIGVQTYTAIFSLILICIPLSVLWVNMENILVFIGQDPLISHEAGKFIIWLLPALFAYAILQSLVRYFQIQSMLLPMLASSCVTLIIHIPLCWALVFKTRLNNVGGALAVSISMWSNVIILGSYMRYSSACAKTRAPISLEVFKGMQEFFRFAVPSAVMVCLEWWSFELLVLLSGLLPNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNPHAARVAVLAAMSLAVIETSVVSAALFACRHVFGYIFSNEKEVIDYVTFMAPLVCISVILDSIQGVLTGIARGCGWQHLGVYVNLGAFYLCGIPVAAILAFVVRVGGKGLWIGIQCGSFVQTILLSVITSCINWEKQAINARKRLFDDELSAENILANAIALLLFVSVLKRCNFSMTLRESMEKGLLEKKEEVKDGGSGIIRWSVFGEEVKRVGYLAGPMIGVNLSQYFLQIISMMMVGRLGKLALSSTAIAISLCNVSGFSVIFGMSCALETRCGQAYGARQYRKFGVQIYTAIVSLAFVCLPLTFLWMNLGNLLILLGQDPLVSLEAGKFALCMIPALFAYATLQSLVRFFFMQSLMSPLVISSFITLCFHVAFSWFMVFKSGLGNLGAAFSIGTSYWLNVTLLGLYMKFSTQCEKTRVPISMELFHGIGEFIRYAIPSAGMICLNISATIYTIPESIGSAASARVSNALGAGSPQSAQVSAYASMTLAASEALLVSSIIFASRQILGYAFSNDEDVVFYVTNMVPLLSLSLILDSLHGTLSGIARGCGWQHLGAYVNLGAYYGFGIPIAAILGF 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02875 899 CDD MATE_eukaryotic 531 899 IPR045069 GO:0042910|GO:1990961
Phco6g02875 899 NCBIfam MATE family efflux transporter 36 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02875 899 CDD MATE_eukaryotic 26 460 IPR045069 GO:0042910|GO:1990961
Phco6g02875 899 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 456 - -
Phco6g02875 899 Pfam MatE 257 420 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02875 899 Pfam MatE 541 700 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02875 899 Pfam MatE 36 195 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02875 899 Pfam MatE 764 895 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02875 Phco-Chr6 49869967 49878105 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02875 6 49869967 49878105 Phco6g02875 6 49869967 49878105 ECH
Phco6g02875 6 49869967 49878105 Phco5g00308 5 2570830 2573378 ECH