Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02864 ATGGCCGCGTCGCCCTCCTCCTCCACCGCGGCCTCCACCAACATCGTGCTCGCGATCTTCGAGAAGAAGACGAACACCGTCGATCTGTATCGCCCACTCCGCAACTACGTGGCGTTTCACTACTCCGAGCGCGAAGCGCAGAACCTCGAAGACGATCTCCAAACCCTAAAGCAACTTCGCTCCGACCTCGAACGTCACACCGATCCGTCCCTCCCGGCGCGCCGCGATCTCCTCCAAACCTACTTCAAATCTCTTTGCCTTGTCGAGACGCGCTTCCCAATCTCCCCCGACCCTGACCACGTCAACGCCCTCACCTTTGTCTGGTTCGATGCCTTCAAGCCAAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCTCTGTGCTCTTCAATTTGGGCGCCGTTTACAGTCAGATTGGATGTTCCTACGATCGGAACACCGTTGACGGCCGCCGCCAGGCCTCGCATGCCTTCATTGCTGCTGCCGGTTCCTTTGCCTTCCTCCGCGACAACGCCTCCATGAAGGCATCCGTTGGGAACTCCACCACCGTTGATTTGTCCGTTGAGTGTGCCGGGATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAAGAGTGCGTCTTCGAGAACACCATTGCTAAAGGGAGCACTCCCGGTGTCTGTGCCAAGATCTCCAGACAGGTTGGAATATATTACGAGGAAGCTTTAGCTGCGCTGAATGTTGCACCTTTGAGCCAGCATTTTGAAAAGTCCTGGATAGTTCATGTACAGTTAAAGGCGGCACTGTTCTATGCAGAAGCTTGTTATAGGTATGGATTGGAGCTGCATGATAAAGAGGAAATAGCAGAGGAGATTGCACGACTGCGGAGTGCTGTTAATGTGTTGACTGAGGCGAAGAAGAGCTCTAAGGGTGCTGCGGTGCAAATTCTTGATGCAATTGGCAAGTTAGAGGCCAACATTAACCGGAACCTTGAAAGAGCTGTCAAGGAGAATGATAGGGTTTATCTCATGAGAGTTCCTCCGCCAAGTTCGTTATCGCCTCTTCCAGCATTTTCTATGGTGAAGCCCATGGCAATGAATGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGCGAGTCTTGTTCCGGACAGCAGTGCAAAGGCCCTCTCCCGGTATACTGAAATGGTAGATGATGTTATAAGAACACAGGCTGAAAAGTTGCAGCAAGCTAGTGAGCTAACCCGTGTTAGGCTTAAGGAAATGGAACTGCCAGATTCCATTCTTGCTTTGGAAGGAAATTTTACTCTTCCAACAGGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAGCAGAGTTGCAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAGTTGCTGGTCCAGACTGAGGAATTGTTGCAGAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGTCAATTTGGCACAAAATGGACCAGGCCCCAGTCAAGCACCTTGACTAAAAACTTGCAGGATAGGCTCAACAGATTTGCAGGTAACTTGAAACAAGCTGCTGAAAGTGATGGCAGGATTGAGCGATCAGTTAGAGAACATTCAGCACTCATGTCAATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGCTTGGCAAGGCCGATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGATCTCTCAAGCAAAGTTTGAGGCAACTAGAAATTCTAGGAGCTCAAAGGGCCGGTCTTGAAGATATGCTTAAAGATATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACTTCCACCGGTTCTTACGATGATCTCTTCAAGAAGGAGCTAGCAAAATATGACCATATTTGTGATGAAATAGCTCAAAATATTGAGGCACAAGAGCAATTATTGCTGCAGATCCAGGCTCAAAATGATGAGTTCTCTGTAATCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAAGCCTACAAGCAGATTGAAGCCTCCATAGCAAAATTTCGAGAGATAAAAGAAAACATCAATGAAGGGTTAAAATTCTATGTAACCCTGCAGGATGCAATCACAAACGTAAAGCAGCAGAGCAACGACTTTGTAATGACAAGGAATATTCAGTGCAGGGAAATGATTGATGATGTCCAGAGACAAGTGGCTGGTCTAAGTTTCCAGGACAAAAACACAGGTACTTTTAACAGCAACTACCCATCAGTGGGAAGCCAAAATCAAAGAGCCAGTATACAAACAGATCCTCGTCCACAAGCACCTTATTATCAGCCAGTTGAGCAGCCACCAGTTGCTCCCTATGGCCATCATGCACCTCCCCCATATGGTGGTCCTGCACATCATCAGCCTCCACCTCCATACCACATTCCACCATCATCAACTGCTCCATACCCACCCGCTCAGGTTCACCAGCAGCCACCGGGAAACCATGAGTATGGCCAGCCAGCATATCCAGGATGGCGAGGCCCGTACTATAATGCACAAGCACAGCAACCTGGTTCTGTGCCGCGGCCTCCTTATACCATTCCATCTCCATATCCTCCGCCTCACCAAAGTGGTTACTATAAGCAGCAATAG 2613 0.4868 MAASPSSSTAASTNIVLAIFEKKTNTVDLYRPLRNYVAFHYSEREAQNLEDDLQTLKQLRSDLERHTDPSLPARRDLLQTYFKSLCLVETRFPISPDPDHVNALTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVYSQIGCSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGNSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVAPLSQHFEKSWIVHVQLKAALFYAEACYRYGLELHDKEEIAEEIARLRSAVNVLTEAKKSSKGAAVQILDAIGKLEANINRNLERAVKENDRVYLMRVPPPSSLSPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTGLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHSALMSILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLEILGAQRAGLEDMLKDMKRKDDILPKLMTSTGSYDDLFKKELAKYDHICDEIAQNIEAQEQLLLQIQAQNDEFSVIFNLEDYKASREKAYKQIEASIAKFREIKENINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIDDVQRQVAGLSFQDKNTGTFNSNYPSVGSQNQRASIQTDPRPQAPYYQPVEQPPVAPYGHHAPPPYGGPAHHQPPPPYHIPPSSTAPYPPAQVHQQPPGNHEYGQPAYPGWRGPYYNAQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02864 870 ProSiteProfiles BRO1 domain profile. 15 409 IPR004328 -
Phco6g02864 870 Gene3D alix/aip1 like domains 423 704 - -
Phco6g02864 870 SMART BRO1_2 15 399 IPR004328 -
Phco6g02864 870 CDD BRO1_Alix_like_1 16 371 - -
Phco6g02864 870 Coils Coil 279 299 - -
Phco6g02864 870 CDD V_Alix_like_1 377 713 - -
Phco6g02864 870 Coils Coil 39 66 - -
Phco6g02864 870 MobiDBLite consensus disorder prediction 735 870 - -
Phco6g02864 870 MobiDBLite consensus disorder prediction 848 862 - -
Phco6g02864 870 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Phco6g02864 870 MobiDBLite consensus disorder prediction 767 815 - -
Phco6g02864 870 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Phco6g02864 870 Pfam BRO1-like domain 17 394 IPR004328 -
Phco6g02864 870 Coils Coil 578 598 - -
Phco6g02864 870 Coils Coil 627 647 - -
Phco6g02864 870 MobiDBLite consensus disorder prediction 735 763 - -
Phco6g02864 870 Gene3D alix/aip1 like domains 11 376 IPR038499 -
Phco6g02864 870 Coils Coil 451 478 - -
Phco6g02864 870 PANTHER PCD6 INTERACTING PROTEIN-RELATED 17 867 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02864 6 49762072 49771437 Phco6g02864 6 49762072 49771437 ECH