Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02839 ATGTTAATGCTGGGTTTCATGGCGCTTTTTCGATTATCCAAAAGGTTCATCATATCCAATCTCCTCCTTCCCCTCACAGAAACTTCTTCAACATCCCTTCCTCCTTTGTCAAGTTCAATTTTTTACCACCATTACTCCAAACCCACAATCCAAGTTCCCTATGGGTCTCCAAAAAACACCACATTGGCCTTCCACACGGCCCAACCTAGCTCCACCCCCAACGCCGAAGCAATCTGCAGAATCTTATCCAACTCCCGCGACTCCACCGTCGACGTCTCTCTTGCTGCTGTTGTGGTGAATCCCTCGCCGGAGCTGGTACTGGAGGTCTTGAACAAACTCAGCAATGCCGGTACCCTCGCGCTTTCGTTCTTCCGTTGGGCCGAGAGGCAAAGCGAGTTCAAACACACCACAGAGACCTTCCACTCATTGATCGAAGCACTGGGAAAGATCAGACAGTTCAAAATGATTTGGACTTTGATCGACGACATGAAGCAACGAAAGTTGCTGAGTTCTGACACTTTTGCCCTCGTTGCACGGCGATACGCGCGAGCACGGAAGGTCAAGGAGGCAACTGAGACATTCGAGAAGATGGAGCGTTACGGTTTGAAGCCGCATGTATCGGATTTCAATAGGTTGATCGATGTGTTGTGTAAATCCAAGTGTGTTGAGAAGGCACATGAGGTGTTTGATAAAATGCGGCGCTTAGGGTTGGACCCTGATATCAAGTCCTACACCATTTTGCTAGAAGGGTGGAGTCAGCTGCAGAACCTGATCAAACTCAATGAGTTGTGTAGGGAGATGGAGGATAAAGGGTTTCAGATTGATGTTGTTGCGTATGGCATAATCATCAATGCGTATTGCAAAGCTAAGAAATTTGATGAAACCATTGGGTTGTACCATGAGATGAAAGCTAAGGGTGTGAAGCCTAGTCCCCATGTGTATTGTACTTTGATCAATGGTTTGGGTTCGGATAAGAGATTGAACCAAGCTCTTGAATTTTTTGAGGTATCTAAGGCTAGTGGCTTTGCACCAGAGGCTCCCACCTACAATGCTGTTGTTGGGGCTTATTGCTGGTCTTTGCGTATGGATGATGCGTATAGGATGGTTGGTGAGATGAAAAAATGTGGGATTGGTCCAAATTCTCGAACTTTTGATATTATACTTCATCATCTTATAAAGGTTGGTAGGATTGAAGAGGCTTGCACGGTTTTTCGCAGAATGAGTGGCGAGTTTGGGTGTGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGTGAGATTGGATATGGCGATGGCAGTTTGGGATGAGATGAAAGAGAAGGGAATTCTTCCTGGAGTGCACATGTTCTCCACGTTGATCTGTTCCTTGTGCCATGAAAATAAGTTGAATGAAGCGTGTAAGTACTTTCAAGAAATGTTGGATGTGGGTATTCGGCCTCCTGCCAAAATGTTCAGCACCTTGAAGGAAGCTCTAGTTGATGCGAGGATGGAGCATATTGCCATGCATTTTGCTTTGAAAATTGATAAACTCAGGAAATCTCCGTTGGTTGCTTGA 1572 0.4574 MLMLGFMALFRLSKRFIISNLLLPLTETSSTSLPPLSSSIFYHHYSKPTIQVPYGSPKNTTLAFHTAQPSSTPNAEAICRILSNSRDSTVDVSLAAVVVNPSPELVLEVLNKLSNAGTLALSFFRWAERQSEFKHTTETFHSLIEALGKIRQFKMIWTLIDDMKQRKLLSSDTFALVARRYARARKVKEATETFEKMERYGLKPHVSDFNRLIDVLCKSKCVEKAHEVFDKMRRLGLDPDIKSYTILLEGWSQLQNLIKLNELCREMEDKGFQIDVVAYGIIINAYCKAKKFDETIGLYHEMKAKGVKPSPHVYCTLINGLGSDKRLNQALEFFEVSKASGFAPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIILHHLIKVGRIEEACTVFRRMSGEFGCEPSVSTYEIMVRMFCNEVRLDMAMAVWDEMKEKGILPGVHMFSTLICSLCHENKLNEACKYFQEMLDVGIRPPAKMFSTLKEALVDARMEHIAMHFALKIDKLRKSPLVA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02839 523 Gene3D Tetratricopeptide repeat domain 283 407 IPR011990 GO:0005515
Phco6g02839 523 Gene3D Tetratricopeptide repeat domain 108 282 IPR011990 GO:0005515
Phco6g02839 523 Pfam PPR repeat 446 478 IPR002885 -
Phco6g02839 523 Pfam PPR repeat 412 444 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Phco6g02839 523 Gene3D Tetratricopeptide repeat domain 408 484 IPR011990 GO:0005515
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Phco6g02839 523 Pfam PPR repeat family 208 250 IPR002885 -
Phco6g02839 523 Pfam PPR repeat family 348 392 IPR002885 -
Phco6g02839 523 Pfam PPR repeat family 275 321 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 415 IPR002885 -
Phco6g02839 523 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 57 385 - -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 419 451 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 454 485 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 383 417 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 277 310 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 348 380 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 209 241 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 173 204 IPR002885 -
Phco6g02839 523 NCBIfam pentatricopeptide repeat 313 344 IPR002885 -
Phco6g02839 523 Pfam PPR repeat 179 202 IPR002885 -
Phco6g02839 523 Pfam PPR repeat 139 167 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Phco6g02839 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02839 Phco-Chr6 49592030 49593601 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02839 6 49592030 49593601 Phco6g02839 6 49592030 49593601 ECH