Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02398 ATGGGCAAGAGCAAAAACTCTCGTGCTTTTCCTCTTCTCCTTCCCCTCCTCTTCTTCACTCTTGTAGGAACCTCTCATGGCGGTGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGTACCCTTTCCGAAGCATGTGCCACAGGGAGATACACTCACGTAAACATAGCTTTCCTCAACGTATTCGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAACCCCGCAACCAATTCCTGCACAAAGTTCAGCGCTGAAATCAAGGACTGCCAAAGCAAAAACATCAAGGTGTTGCTTTCCATAGGTGGTGGCATTGGAAGCTACACTTTGGCTTCCGTTGAGGATGCAAGAAACGTTTCAACCTTCTTGTGGAACACTTTCTTGGGGGGCAACTCATCAACAAGACCACTAGGTGATGCCGTGTTAGATGGCATAGATTTCGACATAGAACAAGGCTCAACAGAAAACTACGAGCACCTTGCCCGTTTCCTCAAGGCATATAGTAGGGTAGGGAAGAGGGTATACCTAGGTGCTGCCCCTCAGTGTCCAATTCCTGATAGGTTTTTGGGCACTGCCCTTGACACAGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAACAACCCTCCATGCTCGTACGCAGATGGGAACATAACCAACCTTGTGAATTCTTGGAACCGTTGGACTAGTACAGTACCAGCAGGGAAGATATTCTTAGGGTTGCCGGCGGCTCCGGCAGCCGCTGGCAGCGGTTTCATCCCGGCCGATGTGTTAACGTCTCAAATCCTTCCGGTCATTAAGGAGTCGCCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTTTGATGTTGAGAACGGGTATAGTACTTCAATTATTGGAAGCGTGTGA 903 0.4939 MGKSKNSRAFPLLLPLLFFTLVGTSHGGGIAIYWGQNGNEGTLSEACATGRYTHVNIAFLNVFGNGQTPEMNLAGHCNPATNSCTKFSAEIKDCQSKNIKVLLSIGGGIGSYTLASVEDARNVSTFLWNTFLGGNSSTRPLGDAVLDGIDFDIEQGSTENYEHLARFLKAYSRVGKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCSYADGNITNLVNSWNRWTSTVPAGKIFLGLPAAPAAAGSGFIPADVLTSQILPVIKESPKYGGVMLWSRFFDVENGYSTSIIGSV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02398 300 PANTHER ENDOCHITINASE 18 296 - -
Phco6g02398 300 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Phco6g02398 300 FunFam Acidic endochitinase SE2 28 300 - -
Phco6g02398 300 Pfam Glycosyl hydrolases family 18 30 284 IPR001223 GO:0005975
Phco6g02398 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975
Phco6g02398 300 Gene3D Glycosidases 28 299 - -
Phco6g02398 300 CDD GH18_hevamine_XipI_class_III 28 298 IPR045321 -
Phco6g02398 300 SUPERFAMILY (Trans)glycosidases 25 296 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02398 Phco-Chr6 45371762 45372664 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01859 9 43093030 43094190 Phco6g02398 6 45371762 45372664 ECH
Phco6g02398 6 45371762 45372664 Phco6g02398 6 45371762 45372664 ECH