Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02125 ATGGTCTTGGGGAAGCATAAAGGGTGGCGTGGACATAGGAAGAGTATAGAAGAACGTGGGGGGCTTCACCGAGAGTTCCATATAAAACAGGAGGCAGCAGCAGCTGTAGACCCTAGGGAAATGATACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGAGGAAGAGCCGGGTTGAACATGTACCCTGGTGAAGTCTCTCAAATCATGCATCAGCCTTGGTCCATGCCTCATAATCAGGTTCATCACCCCTTCAACCCGGTGAGAGAGCATGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAAGTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCATCTTAGGATCATATCAGACACCCTCGGACCGGTGGTTCAACCCGGTTCAGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTGCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCCGTTCCTACGGAGGCTGATGAGTTAACTGTGGTGGACGAAGCTGATGAAGATGGGAAGTCAGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGGTCAGATCTGTTCCCTGAACTCATCGGGACATTGAAAGCGTTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGGCGTGTGAAGAACGTGTTGTTCATCACTGGGGAAGAAGAAGACTCAAGCAGTGGCAGCGAGGACCATAACCACCAACAACACTACTGCATTAGCTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGCGTGGGGGATGAGTCTGCTTCAGCAAATATTAAGAGACAAAGGACCAACATAATATCAATGTCCTAG 1137 0.482 MVLGKHKGWRGHRKSIEERGGLHREFHIKQEAAAAVDPREMIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQNNDIFGGGGRAGLNMYPGEVSQIMHQPWSMPHNQVHHPFNPVREHDPFLVPPQPSPYASLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGKSVIKASLCCEDRSDLFPELIGTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDSSSGSEDHNHQQHYCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02125 378 FunFam transcription factor bHLH30 188 251 - -
Phco6g02125 378 CDD bHLH_AtAIG1_like 188 264 - -
Phco6g02125 378 PANTHER TRANSCRIPTION FACTOR BHLH30 72 374 IPR045847 GO:0003700|GO:0006355
Phco6g02125 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 249 IPR036638 GO:0046983
Phco6g02125 378 SMART finulus 199 248 IPR011598 GO:0046983
Phco6g02125 378 Gene3D - 188 249 IPR036638 GO:0046983
Phco6g02125 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Phco6g02125 378 Pfam Helix-loop-helix DNA-binding domain 196 242 IPR011598 GO:0046983
Phco6g02125 378 CDD ACT_UUR-ACR-like 279 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02125 Phco-Chr6 41857241 41862154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g02125 HLH 1.9e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02125 6 41857241 41862154 Phco6g02125 6 41857241 41862154 ECH