Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02115 ATGGATGCAGGCAGTTCAACGGATGAAACCACCACCAGCGACTCTCTTTCCCTTCCTCCCAACCAATCTCCGCCGCCTCTCATCCGAGTCGGAAGTGGCGGCGTCGACCCCGACGCTGTTTCCGGCGAGGCCGAATCCCGCAAACTTCCTTCTTCCAAATACAAAGGCGTGGTACCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGACGCGACGCTGTCACAAACTTCAAGCCTCTTGCCGGAGCCGGCGACGACGCAGAGTCTGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGCAAACACACCTACGACGACGAGCTCCAGCAGAGCACTCGCTGCGGTAGGCGCCGCCGCAACGCCGAGGCTGCATCGAGCGGTGCGTTTGACCCGAAGGCGCGTGAGCAGCTTTTCGAGAAAACGGTCACGCCCAGCGACGTCGGGAAGCTGAATAGATTGGTTATACCAAAGCAGCACGCGGAGAAGCACTTCCCGTTGAGCAGCGGATCCGGTAGCGGAGTCTCGCTATGCACTGCGGCGGCGGCGAAGGGAGTGCTTTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGCTACTCGTATTGGAATAGTAGCCAGAGCTACGTTCTTACCAAAGGATGGAGCCGGTTCGTGAAGGAGAATAATCTGAGAGCCGGAGATGCGGTTCGGTTTTTCAAGTCAACTGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCCAGGAGCAGTGGCGGTATTTGTGAGCTTAATAACAATAATGCTGGCGGTTTGTTTGTCCCGGTGGGACCAGTTGTTGAGCAGGTTCAGATGGTTCGGCTTTTCGGGGTAAACCTTTTGAAACTACCCGGTTCGGATGGTGTCCGGGTTGGTTATGAGGGGAAGCGCAAAGAGATGGAACTGTTTGCATTTGAATGTAGCAAAAAGTTCAAAGTAATCGGAGCTTTGTAA 1080 0.5611 MDAGSSTDETTTSDSLSLPPNQSPPPLIRVGSGGVDPDAVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRCGRRRRNAEAASSGAFDPKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSSGSGSGVSLCTAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCKARSSGGICELNNNNAGGLFVPVGPVVEQVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKFKVIGAL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02115 359 MobiDBLite consensus disorder prediction 142 161 - -
Phco6g02115 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 332 IPR044800 GO:0003700
Phco6g02115 359 SUPERFAMILY DNA-binding pseudobarrel domain 171 282 IPR015300 -
Phco6g02115 359 Gene3D - 162 290 IPR015300 -
Phco6g02115 359 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Phco6g02115 359 ProSiteProfiles AP2/ERF domain profile. 53 108 IPR001471 GO:0003700|GO:0006355
Phco6g02115 359 CDD B3_DNA 172 280 IPR003340 GO:0003677
Phco6g02115 359 CDD AP2 52 107 IPR001471 GO:0003700|GO:0006355
Phco6g02115 359 ProSiteProfiles B3 DNA-binding domain profile. 173 286 IPR003340 GO:0003677
Phco6g02115 359 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Phco6g02115 359 Gene3D AP2/ERF domain 52 109 IPR036955 GO:0003700|GO:0006355
Phco6g02115 359 FunFam AP2 domain-containing protein RAP2.8 52 109 - -
Phco6g02115 359 Pfam B3 DNA binding domain 173 269 IPR003340 GO:0003677
Phco6g02115 359 MobiDBLite consensus disorder prediction 1 18 - -
Phco6g02115 359 SMART rav1_2 53 114 IPR001471 GO:0003700|GO:0006355
Phco6g02115 359 SMART B3_2 173 285 IPR003340 GO:0003677
Phco6g02115 359 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02115 Phco-Chr6 41700868 41701947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Phco6g02115 B3 2.8e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02115 6 41700868 41701947 Phco6g02115 6 41700868 41701947 ECH