Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco6g02079 | ATGGCACTCTCGCGCCTTCACCACCCTCTCTTCTCTCGCTCCCTTCGCATCCTCTCTTTTTCCACCAGATCCCTCTCTCGAACTTGTAATTCAACGATTTTTGCCGTGGGAGCTCATGCGAATATAAGACCCACATCTTGCTCAGGGATTACTCGAATTTGTGATAGATCTTTGAAGTCAAAGTGGACTGATGTCAAATGCTTTTCATCTTCAGATATTTCACATGAAGTCCTTGGGATGCCTGCTTTATCTCCTACAATGACGCAAGGTAATATTGCAAAATGGAGGAAGAAAGAAGGAGAAAAGATAGAAGTGGGGGATGTACTATGTGAAATTGAAACTGACAAAGCTACACTAGAATTTGAAAGTCTTGAAGAGGGATTTCTGGCTAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCTGTTGGACAACCAATTGCTATAACAGTTGAGGATGAAAAGGACATCCAAAATGTTCCTGCTTCCGCTGGGGGTGGGGTTGAAGAGACAAAACCAGCCCAGCAGGATGTTCCAGATGAGGGGAAACCAGAATCAACTTCTACTATCATTAATGCATCAGAACTTCCTCCTCATTCCCTTCTTGAAATGCCAGCTTTGTCTCCGACAATGAACCAAGGTAACATTGTTAAATGGAGGAAACAAGAAGGAGACAAGATTGAAGTGGGTGATATATTATGTGACATAGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGGGTACCTGGCTAAGATACTTGCTCCGGAAGGTTCAAAAGAAGTGGCAGTTGGGCACCCTATTGCGATAACAGTTGAAGATGCAAGTGACATTGAAGCTATAAAGAATTCTGTTAGCAGCAGTTCAACAAAACAACAGAAGGCCCCCCAACATGACACTAAAAGTGAAGTCAAAGCTCAAAAAAACAAAATAACACGAATCAGCCCAGCTGCAAAGTTGCTTATTGCAGAATATGGATTGGATGCATCAACATTGAATGCAACTGGTCATTATGGCACCCTACTGAAAGGGGATGTTCTTTCTGAAATTAAGTCAGGAAAATTGTCTCCTAAACCTGCTTCATCTAAAGAAAAGGTGCTGTCATCTCAAAGTCATCAACAAGTTGCAGCTTCTCAAGAATCAAGGTCTGACTTAGAGCAGTCAGATGCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCAAAACAAAATACACCACACTTATATTTATCATCAGATGTCATACTGGATCCTCTTCTTTCCCTTCGGAAGGATCTTAAAGAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTATCAAAGTTGTAGCCGCAGCTCTCAGAAATGTACCTGAAGCAAACGCATACTGGAATGTTGAGAAGGGTGAGATCATTTTAAATGATTCTATTGATATATCCATAGCAGTTGCCACGGATAAGGGCTTGATGACTCCAATAATAAAAAACGCTGATCAGAAGACTATCTCTGCTATCTCCTCTGAGGTCAAGGAACTAGCTGCAAAGGCACGTGATGGCAAGTTGAAGCCTCAGGAATTCCAAGGGGGGACTTTTAGCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAACCCCCCTCAGGCCTGCATTCTTGCTGTTGGTAGAGGCAACAAAGTTGTGGAACCAGTAATTGGAGATGATGGAGTTGAGAAGCCATCGATTGCCACTAAGTTGAGCTTAACGTTGTCTGCTGATCATCGTGTTTTTGATGGCAAGGTTGGAGGTGCATTTCTCTCTGCGTTGCAATCAAACTTCAGTGATATAAGACGACTTCTATTATAA | 1875 | 0.4139 | MALSRLHHPLFSRSLRILSFSTRSLSRTCNSTIFAVGAHANIRPTSCSGITRICDRSLKSKWTDVKCFSSSDISHEVLGMPALSPTMTQGNIAKWRKKEGEKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDEKDIQNVPASAGGGVEETKPAQQDVPDEGKPESTSTIINASELPPHSLLEMPALSPTMNQGNIVKWRKQEGDKIEVGDILCDIETDKATLEFETLEEGYLAKILAPEGSKEVAVGHPIAITVEDASDIEAIKNSVSSSSTKQQKAPQHDTKSEVKAQKNKITRISPAAKLLIAEYGLDASTLNATGHYGTLLKGDVLSEIKSGKLSPKPASSKEKVLSSQSHQQVAASQESRSDLEQSDAYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNVEKGEIILNDSIDISIAVATDKGLMTPIIKNADQKTISAISSEVKELAAKARDGKLKPQEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGRGNKVVEPVIGDDGVEKPSIATKLSLTLSADHRVFDGKVGGAFLSALQSNFSDIRRLLL | 624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco6g02079 | 624 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 75 | 151 | IPR000089 | - | |
| Phco6g02079 | 624 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 199 | 275 | IPR000089 | - | |
| Phco6g02079 | 624 | Gene3D | - | 316 | 357 | IPR036625 | GO:0016746 | |
| Phco6g02079 | 624 | Gene3D | - | 378 | 624 | IPR023213 | - | |
| Phco6g02079 | 624 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 100 | 129 | IPR003016 | - | |
| Phco6g02079 | 624 | SUPERFAMILY | Single hybrid motif | 77 | 167 | IPR011053 | - | |
| Phco6g02079 | 624 | CDD | lipoyl_domain | 204 | 273 | - | - | |
| Phco6g02079 | 624 | MobiDBLite | consensus disorder prediction | 356 | 393 | - | - | |
| Phco6g02079 | 624 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 71 | 175 | - | - | |
| Phco6g02079 | 624 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 309 | 354 | IPR036625 | GO:0016746 | |
| Phco6g02079 | 624 | Pfam | e3 binding domain | 316 | 350 | IPR004167 | GO:0016746 | |
| Phco6g02079 | 624 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 316 | 353 | IPR004167 | GO:0016746 | |
| Phco6g02079 | 624 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 379 | 622 | - | - | |
| Phco6g02079 | 624 | Pfam | Biotin-requiring enzyme | 202 | 273 | IPR000089 | - | |
| Phco6g02079 | 624 | Pfam | Biotin-requiring enzyme | 78 | 149 | IPR000089 | - | |
| Phco6g02079 | 624 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 224 | 253 | IPR003016 | - | |
| Phco6g02079 | 624 | SUPERFAMILY | Single hybrid motif | 202 | 292 | IPR011053 | - | |
| Phco6g02079 | 624 | Gene3D | - | 69 | 174 | - | - | |
| Phco6g02079 | 624 | Gene3D | - | 196 | 300 | - | - | |
| Phco6g02079 | 624 | PANTHER | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 202 | 624 | IPR045257 | GO:0006086|GO:0045254 | |
| Phco6g02079 | 624 | MobiDBLite | consensus disorder prediction | 286 | 311 | - | - | |
| Phco6g02079 | 624 | SUPERFAMILY | CoA-dependent acyltransferases | 388 | 624 | - | - | |
| Phco6g02079 | 624 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 394 | 623 | IPR001078 | GO:0016746 | |
| Phco6g02079 | 624 | MobiDBLite | consensus disorder prediction | 365 | 393 | - | - | |
| Phco6g02079 | 624 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 195 | 299 | - | - | |
| Phco6g02079 | 624 | MobiDBLite | consensus disorder prediction | 160 | 187 | - | - | |
| Phco6g02079 | 624 | CDD | lipoyl_domain | 80 | 149 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco6g02079 | Phco-Chr6 | 41082907 | 41100167 | Dispersed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco6g02079 | 6 | 41082907 | 41100167 | Phco6g02079 | 6 | 41082907 | 41100167 | ECH |