Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02030 ATGGCAGATCAAACCCGAGATTCAGGAAACGTATCTGTTGAAGCTTCAGAAGAAAGGAGAAAACTTCCAAACTTTCTGCTATCTGTGAGACTTAAGTATGTCAAGCTTGGGTACCACTATGTAATTTCCAATGCCATGTACCTTTTGCTCATACCCCTTATTGGGGTGGCTTCTGCTCATCTGTCAACTCTCTCTTACCAAGATGTTGCTCAACTATGGGAAAACCTAAAGTTTAATCTTGTCTCGGTGACTGTATGTTCGAGTCTTATAGTGTTCCTTGTCACCTTTTACTTCATGAGTCGTCCAAGAGGTGTTTACTTGGTGGACTTTGCATGTTATAAGCCAGAGCAAGACTGCAATTGCACAAGGGAGACTTTCATGGACAGGTCGATCAAAACCGGGGTGTTTTCAGAGGAGAACTTGTCCTTTCAGAAGAAGATAATTGAGAGGTCTGGTTTGGGGCAGAAGACATGCTTGCCTCCAGCAATCTTGAGTGTCCCACCAAACCCGTGTATGGCTGAAGCTAGGAAAGAAGCGGAGCAAGTAATGTTTGGAGCTATTGACCAGCTTTTGGCAAAAACTGGGGTGAAGGCAAATGATATTGGGATTTTGGTGGTGAATTGTAGCTTGTTCAACCCCACACCATCTCTCTCTGCAATGATTGTGAACCACTACAAGTTGAGAGGGAATATCCAGAGTTATAATCTTGGTGGCATGGGTTGCAGTGCTGGCCTTATCTCCATAGACCTTGCCAAGCAGCTCCTCCAGGTTCATCCAAACTCGTATGCCTTAGTGGTAAGCATGGAGAATATCACTCTCAACTGGTATTTTGGCAACAACCGGTCAATGCTAGTCTCAAATTGTCTCTTCAGAATGGGTGGAGCTGCGGTCCTCCTATCCAACAGGTCTTCTGATCGCACAAGAGCCAAATACCAATTGATCCATACAGTGCGTACTCATAAGGGTGCAGATGATAAAAGCTATGGTTGCGTTTTCCAAGAAGAGGATGAGAATAAAAATATTGGTGTGTCACTCTCGAAGGATTTAATGGCTGTTGCAGGAGAAGCCCTGAAGACCAATATCACAACACTTGGGCCATTGGTCCTTCCCATGTCAGAGCAGCTCTTGTTTTTTGCAACTCTGGTGGCTAGAAAAGTGTTGAAGACGAAAATAAAGCCCTACATTCCTGACTTTAAGCTAGCTTTTGAGCACTTTTGTATCCATGCTGGAGGAAGAGCTGTGTTGGATGAGTTGGAGAAGAATCTGGAGCTCAGTGATTGGCACATGGAGCCTTCAAGAATGACTCTGAACAGGTTTGGTAATACTTCTAGCAGTTCCTTGTGGTATGAACTGGCCTACACTGAAGCTAAAGGGAGGATCAGAAAAGGTGACAGGACTTGGCAGATTGCATTTGGCTCTGGTTTCAAGTGCAACAGTGCTGTGTGGCGTGCATTGAGGACCATTAATCCTGCGAAGGAGAAAAATCCTTGGATGGACGAGATTCACGAGTTTCCTGTTCATGTTCCTAAAGTGGTAACCATTGGTTCCTAA 1551 0.4468 MADQTRDSGNVSVEASEERRKLPNFLLSVRLKYVKLGYHYVISNAMYLLLIPLIGVASAHLSTLSYQDVAQLWENLKFNLVSVTVCSSLIVFLVTFYFMSRPRGVYLVDFACYKPEQDCNCTRETFMDRSIKTGVFSEENLSFQKKIIERSGLGQKTCLPPAILSVPPNPCMAEARKEAEQVMFGAIDQLLAKTGVKANDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNRSSDRTRAKYQLIHTVRTHKGADDKSYGCVFQEEDENKNIGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVLKTKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVHVPKVVTIGS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02030 516 PANTHER 3-KETOACYL-COA SYNTHASE 76 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Phco6g02030 516 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 483 IPR013747 -
Phco6g02030 516 SUPERFAMILY Thiolase-like 314 484 IPR016039 GO:0016746
Phco6g02030 516 FunFam 3-ketoacyl-CoA synthase 115 484 - -
Phco6g02030 516 Gene3D - 108 484 IPR016039 GO:0016746
Phco6g02030 516 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Phco6g02030 516 CDD CHS_like 87 482 - -
Phco6g02030 516 SUPERFAMILY Thiolase-like 91 308 IPR016039 GO:0016746
Phco6g02030 516 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 516 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02030 Phco-Chr6 40177062 40179262 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02030 6 40177062 40179262 Phco6g02030 6 40177062 40179262 ECH