Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01594 ATGCCCCACCAGAATACCATAGAAAGTCTCTCTGCACCAAACACGTCACTTTCACAAAGAAAGCTTGTCCCTTTTGGTAATAACATAACAGCTACCCAACCAGGATTTCTTTCCAGTATATATAATCTCTGTAGGCACTTCTTCCACATAAGCTTCTCAGGAGGTTCATTCATCTCTGCTGTTGTTCAATTTTATGTTTGTTTCAATGCTGTCGTGGAATTTGTCTTGAACCTCTTTGGCTTTGGATCTGCTAGAAGAAAAATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTAGGGGGTCCTACAATGGCAGTCATTGCACTGAAGTGCCCCTCCATTGAAGTTGCTGTTGTTGATATCTCAAAATCCCGCATTGCAGCATGGAACAGTGACCAGCTTCCTATCTATGAGCCAGGCCTTGATGATGTGGTGAAGCAATGTCGTGGCAAGAACCTTTTCTTTAGCACTGATGTGGAGAAACATGTCTTTGAGGCTGACATAGTGTTTGTATCTGTCAACACTCCAACAAAAACTCGTGGTCTTGGAGCCGGCAAGGCTGCAGATTTGACATACTGGGAGAGTGCAGCTCGCATGATTGCTGATGTCTCCAAGAGTGACAAAATTGTGGTAGAGAAATCCACTGTCCCTGTGAAAACTGCCGAGGCTATAGAGAAAATTTTGAGTCACAATGGCAAAGGCACCAAGTTCCAAATCCTATCAAACCCTGAATTCCTTGCTGAGGGAACTGCAATCAAAGATCTTTTCAACCCGGATCGAGTCCTCATTGGAGGCAGGGAGACCCCAGAAGGTCAAAAGGCCATTCAAACATTGAAAAATGTTTATGCTCATTGGGTTCCTGAGGAAAGAATCCTAACCACAAACTTGTGGTCTGCTGAACTGTCCAAGCTTGCTGCTAATGCCTTCTTGGCGCAAAGAATTTCATCTGTCAATGCTATGTCAGCACTTTGTGAGGCCACTGGGGCAAATGTCACACAAGTGTCCTATGCTGTTGGCACTGACACAAGGATTGGCCCCAAGTTCCTGAATGCTAGTGTTGGTTTTGGTGGCTCCTGCTTCCAGAAAGATATCTTGAACCTTGTCTACATCTGTGAGTGCAATGGCCTGCCAGAGGTGGCTGAGTACTGGAAACAAGTGATCAAGATCAATGACTATCAGAAGAGCCGATTCGTGAACCGTGTAGTGTCCTCAATGTTCAACACAGTTGCAACCAAGAAGATTGCCATTCTGGGCTTTGCATTCAAGAAGGATACTGGGGACACAAGGGAGACACCAGCAATTGATGTGTGCAAGGGGCTACTTGGTGACAAGGCACGCCTAAGCATATATGATCCACAGGTGACTGAGGACCAAATTCAGAGGGATCTGTGGATGAATAAGTTTGATTGGGACCACCCCATTCACTTGCAGCCAACTAGTCCTTCAACTGAGAAGAAAGTGAGTGTGGTTTGGGATGCATATGAGGCAACAAAGGATGCAGATGGTGTTTGCATTCTGACTGAGTGGGATGAGTTCAAGACTCTTGATTATCAGAAGGTGTATGACAACATGAGAAAACCAGCATTTGTTTTTGATGGAAGGAACGTTGTGGATATGCAGAAGCTACGTGAGATTGGTTTCATTGTCTACTCAATTGGGAAACCACTGGATCCATGGCTCAAGGACATGCCTGCTGTGGCATAA 1704 0.4519 MPHQNTIESLSAPNTSLSQRKLVPFGNNITATQPGFLSSIYNLCRHFFHISFSGGSFISAVVQFYVCFNAVVEFVLNLFGFGSARRKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILSHNGKGTKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKNVYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPSTEKKVSVVWDAYEATKDADGVCILTEWDEFKTLDYQKVYDNMRKPAFVFDGRNVVDMQKLREIGFIVYSIGKPLDPWLKDMPAVA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01594 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 289 IPR036291 -
Phco5g01594 567 FunFam UDP-glucose 6-dehydrogenase 296 327 - -
Phco5g01594 567 FunFam UDP-glucose 6-dehydrogenase 328 565 - -
Phco5g01594 567 Gene3D - 328 563 - -
Phco5g01594 567 SMART UDPG_MGDP_dh_C_a_2_a 415 539 IPR014027 GO:0016616|GO:0051287
Phco5g01594 567 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 90 273 IPR001732 GO:0016616|GO:0051287
Phco5g01594 567 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 297 391 IPR014026 GO:0016616|GO:0051287
Phco5g01594 567 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 297 396 IPR008927 -
Phco5g01594 567 FunFam UDP-glucose 6-dehydrogenase 87 295 - -
Phco5g01594 567 PIRSF UDPglc_DH_euk 83 567 IPR028356 GO:0003979
Phco5g01594 567 Gene3D - 82 295 - -
Phco5g01594 567 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 88 565 IPR028356 GO:0003979
Phco5g01594 567 NCBIfam nucleotide sugar dehydrogenase 90 535 IPR017476 GO:0016616
Phco5g01594 567 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 402 550 IPR036220 -
Phco5g01594 567 Gene3D - 296 327 - -
Phco5g01594 567 PIRSF UDPglc_GDPman_dh 89 554 IPR017476 GO:0016616
Phco5g01594 567 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 415 538 IPR014027 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01594 Phco-Chr5 51884035 51886678 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01594 5 51884035 51886678 Phco3g02899 3 55435786 55437228 PCT