Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00308 ATGAAAGGAGTTTCAAGGCAGAAAGTGATGGAAGAAATGAAGAAACAGTTATGGTTGGCCGGGCCTCTCTTCACAGTTGGTGTGCTGCAGTACAGTATGCAGGTTATATCTGTTATGTTTGTTGGTCATCTTGGAGAAGTGCCTCTTTCTGGTGCTTCTCTTGCCACTTCCTTCGCATCTGTCACTGGTTTGATGGGTATGGCTAGTGCATTGGATACCTTGTGTGGCCAATCATATGGGGCAGGGCAGCACCATATGCTAGGTATATTCATGCAGAGAGCTATCTTTGTTCTCTCATTTGTAAGTGTCTTTCTAGCAATCTTGTTGGTATTCACCAAACACATTCTAGTTGCCATGCACCAGCAAGTTGCCATAGCTGAGGAAGCAGGCGTATATGCCCTTTACTTGATTCCAAGCCTCTTTGCTTATGGCATCTTTCAATGCCAACTCAAGTTTCTACAAACTCAAAACATTGTCTTCCCCATGGTGCTGAGCTCTGCTGTGGTGGCTTCACTTCATATCCCTTTATGTTGGTTGTTGGTAACTAAATCAGGAGTTGGAAGTAAGGGGGCTGCCATAGCAAATTCAGTATCCTACTGGATCAATGTGCTGCTGATAGGACTTTATGTGAAGTTTTCTTCGTCATGTGAAAAATCAAGAACTGGCATATCAAAGAAGGCCTTGCAAAATATCCCAGAATTCCTTAAAATTTCAATTCCTTCAGCTTGTATGCTTTGCTTAAAGGCTTGGACATTTGAAATAATGGTTCTGCTATCTGGCCTTCTTCCAAATCCTCAGTTAGAAACTTCGGTGTTATCGATATGTCTTAACACATTTGTACTTGCCTGGATGATTCCCTTTGGATTAAGCTCTGCAGCATGCACAAGGATCTCAAATGAACTGGGGGCAGGCAATCCACAAGCTGCAAGTCTTGCAGTTAGAGTTGCTCTCTGCCTGGTCCTTGCTGAGGGTATCATTATGGTATTACTCATGATACTGCTTAGAAAAATATGGGTCAATCTTTATAGCAGTGAAACACAACTTGTAGATTATGTATCAGCCATGATGCCTATTCTTGCAATCTGCAGCTTCCTTGATGGGATTCAAAGTGTTCTTTCAGGCATTGCAAGAGGTTCTGGTTGGCAGAAGATTGGTGCAATTGTGAATCTTGGATCATTTTATTTTGTGGGAGTTCCTTCTGCAGTGGTGTTAGGATTTGTTTTGCACATGAAAGGGAAGGGTCTTTGGTTGGGGATTGTTTCTGCATTCATGGTGCAAGTGATACTTTTTGGTGTCATTACCATCAGAACTAGCTGGGAGAAAGAAGCAAATAAAGCAGCAATAAGAGTCTAA 1353 0.4228 MKGVSRQKVMEEMKKQLWLAGPLFTVGVLQYSMQVISVMFVGHLGEVPLSGASLATSFASVTGLMGMASALDTLCGQSYGAGQHHMLGIFMQRAIFVLSFVSVFLAILLVFTKHILVAMHQQVAIAEEAGVYALYLIPSLFAYGIFQCQLKFLQTQNIVFPMVLSSAVVASLHIPLCWLLVTKSGVGSKGAAIANSVSYWINVLLIGLYVKFSSSCEKSRTGISKKALQNIPEFLKISIPSACMLCLKAWTFEIMVLLSGLLPNPQLETSVLSICLNTFVLAWMIPFGLSSAACTRISNELGAGNPQAASLAVRVALCLVLAEGIIMVLLMILLRKIWVNLYSSETQLVDYVSAMMPILAICSFLDGIQSVLSGIARGSGWQKIGAIVNLGSFYFVGVPSAVVLGFVLHMKGKGLWLGIVSAFMVQVILFGVITIRTSWEKEANKAAIRV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00308 450 PANTHER MULTIDRUG RESISTANCE PROTEIN 6 439 - -
Phco5g00308 450 CDD MATE_eukaryotic 12 445 IPR045069 GO:0042910|GO:1990961
Phco5g00308 450 NCBIfam MATE family efflux transporter 22 416 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00308 450 Pfam MatE 240 402 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00308 450 Pfam MatE 22 179 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00308 Phco-Chr5 2570830 2573378 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02875 6 49869967 49878105 Phco5g00308 5 2570830 2573378 ECH
Phco6g02876 6 49879701 49882528 Phco5g00308 5 2570830 2573378 ECH
Phco5g00308 5 2570830 2573378 Phco5g00308 5 2570830 2573378 ECH
Phco5g00308 5 2570830 2573378 Phco4g03694 4 56568861 56571637 PCT