Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00306 ATGGAGAGAGAAGACCGAAACCAAAGTGCATATCTTCAGTCTCCATTGATTCAGCACTCACATTCATCAGGGGTGGAGGATGGATCAGTAGTAAACGAAAAGCAAAGTAGTTGGAGGAGAATTGAAAGAAGGGACGTTGTTGAAGAAGTGAAAAAGCAGTTATGGCTTGCAGGGCCTTTGATCACAGTGACCCTTTTGAATTATTGCCTCAATGTTATATCTGTTATGTTTGTGGGGCATCTTGGTGAGTTGGCTCTCTCTGGTGCTTCCATGGCCACTTCTTTTGCCTCGGTCACAGGTTTCAGTTTGTTGGTAGGAATGGCGAGTGCCTTGGACACCTTTTGTGGCCAGTCATATGGAGCAAAACAGTACCACATGTTAGGCATACACATGCAGAGAGCCATGTTCATTCTCATGACTGTCAGCATCCCACTTGCAGTTATTTGGGCAAACACAAGTTCCATTCTGATTTTCTTTGGCCAGGATCCGGAAATAGCTGCAGAAGCTGGGATCTATGCTAGGTTTATGCTTCCAAGCCTTTTTGCCTATGGCCTTCTACCATGCCTCAACAGATTCTTGCAATCACAAAATATTGTATTTCCAATGATGTGCAGCTCCGGAATTACCACATTACTACATGTACTTATATGTTGGATTCTGGTGTTCAAATCAGGACTAGGAAGCAAAGGAGCTGCTGTAGCAAATGCCATATCTTATTGGTTGAATGTTACTATACTCTCACTCTATATCAAGTTTTCTCCTTCGTGTGCAAAAACTTGGAAAGGCTTTTCCAAAGAGGCATTGCATAACATTCTCACGTTTTTAAGGCTTGCCATTCCTTCAGCTGTTATGGTTTGTTTGGAAGTGTGGTCATTTGAATCGATGGTTCTCCTTTCTGGTCTTCTTCCAAATGCAAAGTTAGAAACATCAGTTCTTTCCATCTGCTTGAACACTACTGCAACTGTTTGGATGATTCCTTTTGGACTCAGTGGAGCAGTGAGCATTCGTGTCTCAAATGAACTTGGAGCTGGTCGCCCATGGATTGCAAGCTTAGCAGTTCATGTTGTCTTAGTAATAGTCATTATTGAGGGCATCTTGGTGGGAACAGCGATGATACTTGTACGCAACGTCTGGGGCTATGCATATAGCAATGAAACAGAAGTGGTTGAATATGTAGCAGTTATGTTCCCAATTCTAGCAGCATCCAACTTTCTGGATGGAATCCAATGTGTTCTTTCAGGCACTGCTAGAGGATGCGGCTGGCAGAAAATTGGTGCATTTGTGAATCTGGGATCATACTATTTGGTTGGAATTCCATCAGCTGTTGTACTTGCTTTTGTATTGCATATTGGTGGGAAGGGGCTCTGGTTGGGGATCATTTGTGCACTAATTGTTCAAATGTGTTCTTTAATGATCATTACTATTCGTACTGATTGGGGGCAACAGGCAAAGGAAGCCACAGATAGAGTCCATAATTCAGTAACACCAGAAAGCTTAGTCTCATGA 1506 0.4276 MEREDRNQSAYLQSPLIQHSHSSGVEDGSVVNEKQSSWRRIERRDVVEEVKKQLWLAGPLITVTLLNYCLNVISVMFVGHLGELALSGASMATSFASVTGFSLLVGMASALDTFCGQSYGAKQYHMLGIHMQRAMFILMTVSIPLAVIWANTSSILIFFGQDPEIAAEAGIYARFMLPSLFAYGLLPCLNRFLQSQNIVFPMMCSSGITTLLHVLICWILVFKSGLGSKGAAVANAISYWLNVTILSLYIKFSPSCAKTWKGFSKEALHNILTFLRLAIPSAVMVCLEVWSFESMVLLSGLLPNAKLETSVLSICLNTTATVWMIPFGLSGAVSIRVSNELGAGRPWIASLAVHVVLVIVIIEGILVGTAMILVRNVWGYAYSNETEVVEYVAVMFPILAASNFLDGIQCVLSGTARGCGWQKIGAFVNLGSYYLVGIPSAVVLAFVLHIGGKGLWLGIICALIVQMCSLMIITIRTDWGQQAKEATDRVHNSVTPESLVS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00306 501 CDD MATE_eukaryotic 49 485 IPR045069 GO:0042910|GO:1990961
Phco5g00306 501 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 479 - -
Phco5g00306 501 Pfam MatE 280 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00306 501 Pfam MatE 59 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00306 501 NCBIfam MATE family efflux transporter 59 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00306 Phco-Chr5 2556042 2559455 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02877 6 49884850 49887271 Phco5g00306 5 2556042 2559455 ECH
Phco5g00306 5 2556042 2559455 Phco5g00306 5 2556042 2559455 ECH
Phco4g03694 4 56568861 56571637 Phco5g00306 5 2556042 2559455 PCT