Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03694 ATGGATGGAGAAGATCAAAAGTCATCTATACAATCTCCATTGATACATATCACGGTGGAAGATAGGCTCAAAGTTGATAGTATACAACTAAACAAGGATAAGGCAATAGAGAGAGCTGAACTCTATGAAGAAGTGAGGAAACAGTTATGGCTAGCAGGGCCTTTAGTATCTGTTTCTATATTAAATTATTCCCTACAAATTATATCTGTAATGTTTGTGGGGCATCTCGGGCAATTGCCACTCTCTGCTGCTTCAATGGCTACTTCTTTTGCCTCTGTCACTGGTTTTAGCTTATTGGTGGGGGTGGCTAGTGCTTTAGATACCTTGTGTGGCCAATCATATGGAGCAAAGCAGCACCATATGTTAGGCATACACATGCAGAGAGCTATGCTTGTTCTTATGATTGTTAGCATACACCTTGCATTTATTTGGGCAAACACAAGTTCCATTCTAACTGCCCTTGGCCAAGATCCTGAAATATCTGCAGAAGCTGGACAATATGCTCGGCTAATGATTCCAAGCCTTTTTGCCTATGGCCTTCTTCAGTGCCTGAACAAATTTTTGCAAACCCAAAATATAGTATTTCCAATGGTGTTCAGCTCTGGAGTCACTACTTTACTGCATATTGCTATATGTTGGACTATGGTATTCAAATTTGGACTAGGGAACAGAGGAGCTGCCATAGCAAATGCTATATCCTACTGGATAAATGTCTTGATCCTGATACTCTATGTCAAGTTTTCTCCTTCATGTTCAAAAACATGGACTGGATTCTCGAAAGAGGCATTGCATGGCATCCCTTCTTTTCTTAGACTAGCAATTCCTTCAGCTGTTATGGTTTGCTTGGAAATGTGGTCATTTGAAATGATGGTTCTCCTCTCTGGCCTTCTTCCAAATCCAAAATTAGAAGCATCAGTGCTTTCTATCTGTCTGAATACTTCGACAACTGTTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTAAGCACTCGAGTCTCAAATGAACTAGGAGCTGGTCGCCCACAGGCAGCACGGTTAGCTGTGTACTTTGTCTTTGTAATGGCCATTATCGAGGGAGCTTTGATTGGAGCAGTGATGATACTAATGCGCGATATTTGGGGCTATGCATATAGTAATGAAGTGGAGGTGGTTCAATATGTAGCTATCATGTTGCCAATTCTTGCGTTATCCATTTTCCTGGATGCACTACAGTGTGTTCTTTCAGGCACAGCTAGAGGATGTGGTTGGCAAAAGAAAGGGGCTTTGATTAATCTAGGATCATACTATTTAGTTGGGATTCCATCAGCTATCTATTTTTCTTTTGTCATGCACATTGGGGGGAAGGGGCTTTGGGTGGGGATCATATGTGCACTGGTTGTTCAGGTGTCATGCCTTTTTGTAATTACAGCACGCACTGACTGGGAGCAAGAGGCAAGGAAGGCTAAAGAAAGAGTCTACAATTCAATGACAGCAGGGCATGAGGGAGAGAGTTTCGGCACATGA 1503 0.4232 MDGEDQKSSIQSPLIHITVEDRLKVDSIQLNKDKAIERAELYEEVRKQLWLAGPLVSVSILNYSLQIISVMFVGHLGQLPLSAASMATSFASVTGFSLLVGVASALDTLCGQSYGAKQHHMLGIHMQRAMLVLMIVSIHLAFIWANTSSILTALGQDPEISAEAGQYARLMIPSLFAYGLLQCLNKFLQTQNIVFPMVFSSGVTTLLHIAICWTMVFKFGLGNRGAAIANAISYWINVLILILYVKFSPSCSKTWTGFSKEALHGIPSFLRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPKLEASVLSICLNTSTTVWMIPFGLSGAVSTRVSNELGAGRPQAARLAVYFVFVMAIIEGALIGAVMILMRDIWGYAYSNEVEVVQYVAIMLPILALSIFLDALQCVLSGTARGCGWQKKGALINLGSYYLVGIPSAIYFSFVMHIGGKGLWVGIICALVVQVSCLFVITARTDWEQEARKAKERVYNSMTAGHEGESFGT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03694 500 CDD MATE_eukaryotic 44 480 IPR045069 GO:0042910|GO:1990961
Phco4g03694 500 PANTHER MULTIDRUG RESISTANCE PROTEIN 39 474 - -
Phco4g03694 500 Pfam MatE 54 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco4g03694 500 Pfam MatE 275 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco4g03694 500 NCBIfam MATE family efflux transporter 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03694 Phco-Chr4 56568861 56571637 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01328 5 48259923 48264152 Phco4g03694 4 56568861 56571637 ECH
Phco4g03694 4 56568861 56571637 Phco4g03694 4 56568861 56571637 ECH
Phco4g03694 4 56568861 56571637 Phco5g00306 5 2556042 2559455 PCT
Phco5g00308 5 2570830 2573378 Phco4g03694 4 56568861 56571637 PCT