Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02200 ATGGCGCCCACCACCGGAGACCTTCAACTAACTTCTCCCGGCGCCGGCGAACATTCCGACGACCTCGAAGATGTTCGCCTCCTCGATTCCTACGACACACACTACATCCACCACGATGAAACCAAGCGGATTCAGGTCAGAATCACCGGCATGACCTGCGCCGCGTGTTCCAACTCCGTCGAAACCGCTCTCAGGTCCGTTCACGGCGTCACCGACGCTTCCGTCGCTCTTCTTCAAAATAAAGCTGACGTCATTTTCAATCCGAGCCTCGTCAAGGATGACGACATTAAGAATGCGATTGAAGACGCAGGTTTTGAGGCGGAGATCTTGCGGGAGTCCGGTACGGCGGAACGCGGCGGCGGAGCCGCCGTGGTGGGGCAGTTCACGATCGGCGGGATGACGTGTGCGGCGTGTGTGAATTCCGTTGAGGGCATTTTAAAGAGGCTTAATGGAGTGAAAAGAGCGGTGGTGGCTTTGGCTACTTCATTGGGTGAGGTTGAGTATGATCCCAATGTGATTACCAAAGATGATATTGTGGCGGCCATTGAAGACGCTGGTTTCGAGGGTTCGTTTGTACAGAGTAATGGGCAGGGCCAGGTTGTGCTGGGGGTTGGTGGTGTGTACTCTCTGGGTGATGCAAAGGTTTTGGAAGGGATGCTCAGTGGCCTTAAGGGGGTGAGGCAGTTTCGGTTTGACCCGGTGTTGAACGAGCTTGATGTGGTGTATGACCTTGAAGTTATTAGTTCGAGGTCATTGGTTGATGGGATCCATCTGGGAAGTAATGGCAAGTTTAGATTGCATGTTAGGAATCCATACGCTAGAATGGCTTCCAAAGATGGTTCGGAAACCTCAAATATGTTTCGGCTTTTTAGTTCCAGCCTGTTTCTCAGTATTCCTCTATTCTTCATTGGGGTAATCTGTCCTCATATTCCGCTGGTTTACTCCTTGTTACTTTGGAGATGTGGCCCCTTTCTCATGGGTGATTGGTTGAAGTGGGCGTTGGCAAGTGTCATTCAATTTGTAATCGGGAAACGCTTCTATATAGCGGCCGGAAGAGCTCTAAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCCGTTTGTGCTCTTCTTTATGGTGCGGTTACAGGATTTTGGTCTCCGACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTCGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACATCTGATGCTATTAAGAAGCTAGTGGAACTTACTCCAGCAACAGCTATATTGGTTGTCAAAGATAAAGGTGGTAGAACTGTTGAAGAAAGGGAAATAGATTCCTTACTCGTTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCGACACCTCTTTCGAAGGAGGTCAATGCATCTGTTATTGGAGGTACAATTAATTTGCATGGTGCCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAATTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTGGCAAGCATATTTGTTCCTACGGTTGTGATTTTGTCATTATTGACACTACTGTGCTGGTATATAGCTGGGGCTCTTGGAGTATACCCAGAAAAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCTATATCTGTTGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTTGCAACAGGGGTTGGGGCAAACAATGGCGTGTTAATTAAAGGAGGAGACTCCTTGGAAAGGGCTCAGATGGTGAAATATGTCATATTTGATAAAACAGGCACTCTAACTCAGGGGAAATCCAAGGTTACTGCTGCGAAGGTATTCACAGGAATGGATCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCTCTGGGAAAAGCAATATTGCAATATGCCCGCCATTTTCATTTCTTTGATGAGTCTTCTCCTACCTGTGGTACCAAGAATGGTGCTGAGGAGTTCAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGACGGGGTATCCAGTGCTTTATAGATGGGAAGCGTATTTTGGTTGGTAACCGGAAGCTGCTGGAGGAAAATGGCATAGAGATTTCTACAGAAGTGGAAAATTTTGTTGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCGTATGATGATGTATTAACTGGAGCCTTAGGGATTGCAGACCCACTCAAGAGAGAAGCTGCTGTTGTTATAGATGGCCTCCGGAAAATGGGAGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGTATTGAAGATGTTAGGGCAGAGGTCATGCCTGCAGGAAAGTCTGAGGTTGTCCGTTCATTCCAAAAGGATGGAAGTATGGTTGCAATGGTAGGTGATGGAATCAATGACTCGCCTGCATTAGCTGCTGCAGATGTAGGTATGGCAATTGGGGCAGGGACAGATGTGGCAATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGACCTTTCCAAAAAGACCTTCTTTCGTATTCGATTGAATTATGTATTCGCAATGGCATACAATGTTGTTGCTATACCGGTTGCTGCCGGGGTTTTCTTTCCTTCCTTGAGGATCCAGCTCCCACCATGGGTTGCTGGTGCATGCATGGCTATGTCATCTGTCAGTGTCGTATGCTCTTCTTTGCTTTTGAGAAGATACAAAAAACCCAAACTTACTACAATACTTGAAATAGTTGTAAATTAA 2982 0.4608 MAPTTGDLQLTSPGAGEHSDDLEDVRLLDSYDTHYIHHDETKRIQVRITGMTCAACSNSVETALRSVHGVTDASVALLQNKADVIFNPSLVKDDDIKNAIEDAGFEAEILRESGTAERGGGAAVVGQFTIGGMTCAACVNSVEGILKRLNGVKRAVVALATSLGEVEYDPNVITKDDIVAAIEDAGFEGSFVQSNGQGQVVLGVGGVYSLGDAKVLEGMLSGLKGVRQFRFDPVLNELDVVYDLEVISSRSLVDGIHLGSNGKFRLHVRNPYARMASKDGSETSNMFRLFSSSLFLSIPLFFIGVICPHIPLVYSLLLWRCGPFLMGDWLKWALASVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLFGKYLECLAKGKTSDAIKKLVELTPATAILVVKDKGGRTVEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESTPLSKEVNASVIGGTINLHGALHIQATKVGSDTILSQIISLVETAQMSKAPIQKFADYVASIFVPTVVILSLLTLLCWYIAGALGVYPEKWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVIFDKTGTLTQGKSKVTAAKVFTGMDRGEFLTLVASAEASSEHPLGKAILQYARHFHFFDESSPTCGTKNGAEEFKSGWLYDVSDFSALPGRGIQCFIDGKRILVGNRKLLEENGIEISTEVENFVVELEESAKTGILVAYDDVLTGALGIADPLKREAAVVIDGLRKMGVIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKSEVVRSFQKDGSMVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFFRIRLNYVFAMAYNVVAIPVAAGVFFPSLRIQLPPWVAGACMAMSSVSVVCSSLLLRRYKKPKLTTILEIVVN 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02200 993 SFLD Haloacid Dehalogenase 629 918 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 890 902 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 792 803 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 814 824 - -
Phco4g02200 993 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Phco4g02200 993 MobiDBLite consensus disorder prediction 1 20 - -
Phco4g02200 993 CDD HMA 127 188 IPR006121 GO:0046872
Phco4g02200 993 FunFam Copper-transporting ATPase 1, putative 415 537 - -
Phco4g02200 993 SUPERFAMILY HMA, heavy metal-associated domain 36 111 IPR036163 GO:0046872
Phco4g02200 993 FunFam Copper-exporting P-type ATPase A 124 192 - -
Phco4g02200 993 Pfam E1-E2 ATPase 431 626 - -
Phco4g02200 993 SUPERFAMILY HAD-like 646 973 IPR036412 -
Phco4g02200 993 ProSiteProfiles Heavy-metal-associated domain profile. 42 108 IPR006121 GO:0046872
Phco4g02200 993 Gene3D - 38 109 - -
Phco4g02200 993 Gene3D - 126 191 - -
Phco4g02200 993 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Phco4g02200 993 Gene3D - 415 537 - -
Phco4g02200 993 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Phco4g02200 993 CDD P-type_ATPase_Cu-like 288 964 - -
Phco4g02200 993 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Phco4g02200 993 FunFam Probable copper-transporting ATPase HMA5 768 924 - -
Phco4g02200 993 NCBIfam heavy metal translocating P-type ATPase 361 976 IPR027256 GO:0006812|GO:0016020|GO:0019829
Phco4g02200 993 FunFam Copper-exporting P-type ATPase 747 798 - -
Phco4g02200 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 943 IPR023298 -
Phco4g02200 993 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Phco4g02200 993 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Phco4g02200 993 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Phco4g02200 993 Pfam haloacid dehalogenase-like hydrolase 643 881 - -
Phco4g02200 993 CDD HMA 45 108 IPR006121 GO:0046872
Phco4g02200 993 Gene3D - 638 917 IPR023214 -
Phco4g02200 993 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 27 989 - -
Phco4g02200 993 FunFam Copper-exporting P-type ATPase A 40 110 - -
Phco4g02200 993 SUPERFAMILY HMA, heavy metal-associated domain 127 195 IPR036163 GO:0046872
Phco4g02200 993 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Phco4g02200 993 FunFam Copper-transporting ATPase RAN1 654 746 - -
Phco4g02200 993 NCBIfam copper ion binding protein 127 188 IPR006122 GO:0005507
Phco4g02200 993 NCBIfam copper ion binding protein 44 107 IPR006122 GO:0005507
Phco4g02200 993 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Phco4g02200 993 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Phco4g02200 993 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Phco4g02200 993 Gene3D - 658 800 IPR023299 GO:0000166
Phco4g02200 993 SFLD p-type atpase 629 918 IPR044492 -
Phco4g02200 993 NCBIfam HAD-IC family P-type ATPase 746 951 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco4g02200 993 NCBIfam HAD-IC family P-type ATPase 400 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02200 Phco-Chr4 42699606 42705224 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02200 4 42699606 42705224 Phco4g02200 4 42699606 42705224 ECH