Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01947 ATGGAGGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAAGAAAGAAGTAATGCTGATGCTGACATGTTCATCAAGTCGGATGGTGTGAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTTGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGGTGGTGCCGGTGCCGGTGCCAACTATGAAAAGGAGGAGAGGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCGCTGAAGGCTCTCTGTGGTCACATGGCTTGTCACTCCGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGATAGTCAATCTGACACCGAGACTTGTGCTCCATCTCATCCAAGGAGATCCAAGAGAACCAGGGTGAAGACCATTAACCTTTCCAATCACCCTTTTTCTTCTTCTTCTCCTTCTTCTTCTTCTGTTGTTCCGTTGGCCAATGGCTCTTCACCCGTGTCAGAGGTGGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGCTGCTGTCTAGAGATTCTAGCTTCAAGGGTCGTTTTGCTTCGGTTACTGAATTTTCTGATAACAACTCAGTCATTCTAGAAGCAAAATCATCCTCTCCTGATACCCGGCTTGGTGTCAGCAATGGTAATTATAACTTTGTCTCTAATAATGCTTATGATCTTGTTGACAAGAAGTTGCTTAGGGTTAATGATATCAAGTTAAAGTCTGTTGAGTTAGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACATGGTCCCAAAGCCAAAATGGTAGACTCAGATGTCTCAAATGATGAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTAGTAAAGAAATTAGTGATGGAGGATTTGGATTATGATAGAACAGATGGAACTGCAAGGAAGTTTGATTCAAGAAAGAGAAGCAACTACGATTCTCTTGATCACAATCCAGTTGGCGGTTCTAGCAAGATAGCAAATGGTTTTGGTAATGAAGTATGTGGGAATGGCACAAAAGGTAGGAAGTATGAGTTGGAGGGTGAAAGGGACTATGATTCTTATGATTCCATAGAGGAGAGCCATGAAAACAGTTCAGAGACTGAATCATATCCTGCTCCCAGGTCTCATAACAGCAAGGCTCTCAATGGAAAGAAGTCCACCAGCAAGGCAAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGATCCCATTTCATTGGAGGTTCTGAAGAGAACACTCTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCCTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1491 0.4333 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADMFIKSDGVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGGGAGAGANYEKEERFCKECGKGFPSLKALCGHMACHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCAPSHPRRSKRTRVKTINLSNHPFSSSSPSSSSVVPLANGSSPVSEVEQEQEEVARCLMLLSRDSSFKGRFASVTEFSDNNSVILEAKSSSPDTRLGVSNGNYNFVSNNAYDLVDKKLLRVNDIKLKSVELGASDNSGSRYFKHGPKAKMVDSDVSNDEFKWPKVGDKSSKYTATLVKKLVMEDLDYDRTDGTARKFDSRKRSNYDSLDHNPVGGSSKIANGFGNEVCGNGTKGRKYELEGERDYDSYDSIEESHENSSETESYPAPRSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01947 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Phco4g01947 496 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Phco4g01947 496 SMART c2h2final6 441 463 IPR013087 -
Phco4g01947 496 SMART c2h2final6 94 116 IPR013087 -
Phco4g01947 496 SMART c2h2final6 6 28 IPR013087 -
Phco4g01947 496 MobiDBLite consensus disorder prediction 394 437 - -
Phco4g01947 496 MobiDBLite consensus disorder prediction 138 186 - -
Phco4g01947 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 496 - -
Phco4g01947 496 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Phco4g01947 496 MobiDBLite consensus disorder prediction 347 370 - -
Phco4g01947 496 ProSitePatterns Zinc finger C2H2 type domain signature. 443 463 IPR013087 -
Phco4g01947 496 Gene3D Classic Zinc Finger 1 54 - -
Phco4g01947 496 Pfam C2H2-type zinc finger 96 118 - -
Phco4g01947 496 Pfam C2H2-type zinc finger 6 30 - -
Phco4g01947 496 Pfam C2H2-type zinc finger 441 463 - -
Phco4g01947 496 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Phco4g01947 496 MobiDBLite consensus disorder prediction 161 186 - -
Phco4g01947 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Phco4g01947 496 MobiDBLite consensus disorder prediction 405 423 - -
Phco4g01947 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 441 463 IPR013087 -
Phco4g01947 496 SUPERFAMILY beta-beta-alpha zinc fingers 95 463 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01947 Phco-Chr4 38580846 38582336 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g01947 zf-C2H2_6 5.3e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01947 4 38580846 38582336 Phco4g01947 4 38580846 38582336 ECH