Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01927 ATGGTGAAGATTTGTTGCATTGGAGCTGGGTATGTTGGAGGACCCACCATGGCCGTGATTGCATTCAAGTGTTCTAAGGTTGTGGTAACTGTGGTGGATATATCTTCCCAGCGAATCAATGCATGGAACAGCGACCACCTTCCGATCTATGAGCCAGGGCTTGATGATGTGGTGAAGCAGTGTAGGGGGAAGAATCTGTTCTTCAGCACGGAGGTGGAGAAACATGTTTCAGAGGCTGATATAGTGTTTGTCTCAGTGAACACCCCAACAAAAACACATGGTCTTGGAGCTGGCAAAGCAGCTGATTTGACATACTGGGAGAGTGCTGCTAGGATGATTGCTGATGTTTCAAAATCAGACAAAATTGTGGTTGAAAAATCCACAGTCCCTGTGAAGACAGCAGAGGCAATTGAGAGGATCCTTACTCATAACAACAAAGGCATCAATTTCACCATTCTCTCAAACCCAGAATTTCTTGCTGAGGGCACAGCAATTGAAGACCTATTTTATCCGGATAGAGTCCTCATTGGAGGGAGGGAGACCCCACAGGGCCAAAAGGCCATACAAACTCTCAAAGAAGTGTATGCAAATTGGGTTCCTGTGGAGAAAATCCTTTGCACCAATTTGTGGTCTGCTGAGCTCTCAAAGCTTGCTGCCAATGCCTTTCTGGCCCAAAGAATCTCTTCTGTGAATGCCATGTCAGCACTCTGTGAGGCAACTGGTGCTGATGTGGCACAGGTGTCCCACTCAATTGGGACAGACTCAAGGATTGGTCCAAAGTTCCTGAATGCCAGTGTGGGCTTTGGTGGCTCTTGCTTCCAGAAGGACATATTGAACTTGGTGTATATTTGTGAGTGTAATGGCCTTACTGAGGTGGCAAATTACTGGAAGCAAGTCGTTAAGGTGAATGACTACCAAAAAACAAGGTTTGTGAACCGTGTGGTGTCTTCAATGTTCAACACAATTTCATCCAAGAAGATTGCTGTTCTTGGTTTTGCTTTCAAGAAGGACACAGGTGACACTAGGGAAACCCCAGCCATTGATGTGTGCAAGGGGCTGTTGGGAGACAAGGCTAAGTTGAGTATATATGATCCTCAAGTCACTGAAGACCAGATCACAAAGGACCTCTCAATGAGGAAGTTCGATAAGGACCACCCTGCTCATCTTCAACCAGCTAGCCCCACTTCCATAAAGCAAGTATCTGTGGTTTGGGATGCTTATGAGGCAGTGAAAGATGCACATGGTGTTTGCATTATGACTGAATGGGATGAGTTCAAGAAACTTGATTACCAAAAGGTCTTTGACAGCATGCAAAAGCCAGCATTTATATTTGATGGCAGGAATGTTGTGGATGTTAAAAAGGCCAGGGAAATTGGGTTTATAGTTTACTCCATTGGCAAGCCACTAGATCCATGGCTCAAGGACATGCCTGCAGTGGTGGCTTGA 1446 0.4564 MVKICCIGAGYVGGPTMAVIAFKCSKVVVTVVDISSQRINAWNSDHLPIYEPGLDDVVKQCRGKNLFFSTEVEKHVSEADIVFVSVNTPTKTHGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNNKGINFTILSNPEFLAEGTAIEDLFYPDRVLIGGRETPQGQKAIQTLKEVYANWVPVEKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAQVSHSIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVVKVNDYQKTRFVNRVVSSMFNTISSKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQITKDLSMRKFDKDHPAHLQPASPTSIKQVSVVWDAYEAVKDAHGVCIMTEWDEFKKLDYQKVFDSMQKPAFIFDGRNVVDVKKAREIGFIVYSIGKPLDPWLKDMPAVVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01927 481 PIRSF UDPglc_DH_euk 1 479 IPR028356 GO:0003979
Phco4g01927 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Phco4g01927 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Phco4g01927 481 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Phco4g01927 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 200 IPR036291 -
Phco4g01927 481 Gene3D - 241 477 - -
Phco4g01927 481 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Phco4g01927 481 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
Phco4g01927 481 Gene3D - 1 208 - -
Phco4g01927 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Phco4g01927 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Phco4g01927 481 Gene3D - 209 240 - -
Phco4g01927 481 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Phco4g01927 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 478 IPR028356 GO:0003979
Phco4g01927 481 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Phco4g01927 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Phco4g01927 481 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01927 Phco-Chr4 38235842 38237287 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01927 4 38235842 38237287 Phco4g01927 4 38235842 38237287 ECH
Phco4g01927 4 38235842 38237287 Phco3g02899 3 55435786 55437228 ECH
Phco4g01927 4 38235842 38237287 Phco8g02974 8 43697068 43698510 PCT