Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01889 ATGGAAAGAGGCAGAGGCAGTTATGGTGACCGTGGCAGTGGTAGTTATGGTGGCGGTGACGGCAATGCAGATCGCTACACTTCCCGTGACCGATACGGCAGTGCTGGTCGTAGCAGTTACGGCGGAGGTGACAGTTACGGTGGCCGTAGAGGAAGGTTTTACCAACGTCCTCAGCTAAGTAGTGGCAATGAACAAAGGTCTCCTTCCCAACCACAACCACAAGCCCGGTGGCAACCGAAAGTAAACCCTTCTTCCGCTGGTGAATCTTCAGAACCTCACGGTTCTCAACCTCAAACTGAAACTGAAAAACAGACTATTCAAAATCCAGAAGTTGGAGCTTTGAGGATATCAGAGCAGAAAGCAGAGAGTATCAGACCAATGCATAGGCCTGACAAAGGGGGAACAATGGCAGCTCAGAGAAACACGCTTGAGGTGAACCATTTCCATGTTGTGTTCGATGAAAAGAGAGTGATATTCCACTACGAGGTGGACGTGAAGGCCAAGGCTCCGCCCTTGAACAATCGGCCTCAGAAGATTTCCAAGTTTCATCAGTTGTTGATTCGGGATAAGCTGTTTTCCGATCACGCGTTCCCGACTTCGGCGTACGACGGCGAAAAGAACATGTTCAGCGCGGAGCGGTTGACGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGACGCAAGAAGAATGGTTTGCTATTCCGTTACTCTAACACTTGTGAAGGTGCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTTCGATTCCTAGAGATGTTTTACAGGGCTTGGATTTGGCAGCGAAGGAGAATCCCGCGAAGCAGTGTGATAAGGTTGGGTGCTGCTTCTTCCCGAAGGACCATCCCATTAGTGTGCGAGACTCTAAAGGGATAATTGCAACAGGAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAGGGCTTGTCCTTGTGCCTCGACTATTCCGTTTTATCGTATTTTGGGGAGGACAAACCGGTGCTGAATTTTCTGCACGAACAGATTGAGAACTTCAATTTGGGGATGTTTCCCAAGTTCAAGAAAAGAGTTGAGGATTTACTTGTCGGATTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAGAAATACACTATAGCAAGGTTGACACCCATGGTTACGAGAAAGATCAGATTCCCTGTTTTGGACACTAAGGGATGGAATCCAGAACCGGAGTGTAGTCTGATTGATTACTTTTTCAGGAAGCATCAGGTGGAGATTCAACACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTACCCATGGAGTTGTGTGTGTTGGTTAAGGATCAAAGATGCCCCAAAGGTAACTTACTGAATACAGATGCTGGCAATATGTTGAGAAGCATGTCACTGGCTTCTGCAGGAGAGAGGCGAAATAAAATAAGAACTATAGTGAAATCAAAGGAAGGACCGTGTGGAGGTGGTGTTATTGAAAGTTTTGGAATGCGTGTGCACACTTCCATGACGAAAGTGACTGGACGTGTAATTCAGCCCCCAGAATTGAAAATAGCTAATCGAAGTGGTGGGATTATTAGTATGGCACTGGAAGTGGGGAAACCTCAGTGGAACCTAAAGGAAGGATCAATGGTGGAAGGCAAGCCGCTTAAGTGTTGGGGCATTCTTTATTTTGCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCATTAAAAATATTCGTAGGAAATGCGGATTACTCGGCATTGAAATGGGGAAGCCAGCTTGGTCTGAAGAATTTTCTATCTCGATTCTTCGCAAATACGATTCGCTGTGTGAATTACTTAAAAAAATTGATTGTGAGGTTCAACAGAGATGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGAGAAAGATTCAGGTTACAAGTGCCTCAAATGGATTGCCGAGACCAAGGTTGGGGTAGTGACACAATGCTGCTTACGTTCTCATGCTAATGATGCGAAGGACCACTTTCTTACAAATCTTGTCCTCAAAATGAATGCCAAAGTTGGAGGAAGTAATGTAGAGCTCATGAATAGGCTTCCAAACTTTGACGGGCAAGGTCATGTTATGTTCATAGGGGCTGATGTTAATCATCCAGCTTCCAGGGACAACAACAGCCCATCAATTGCTGCCGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAACGTCATCGTGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCGTGAACTAGTTTCATATTACAATAGGTTGAACAAAGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTCATATGGTTCTCACGGAAGAGTTGGAAGATTTGAAATCAGTGTTTCGTGATTCAAACCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCATACTCGATTTTTTGTGAAGGATCGAAATTTCAATGTGTTACCTGGAACAGTTGTGGACACAAAAGTAGTACATCCTTTTGAATTTGACTTCTACCTTTTTAGTCACGAGGGGATATCGGGTACAAGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAATTTACATCTGATGATTTGCAGAAACTCATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCTGTATCTTTAGTTCCTCCAGTGTACTACGCTGATCTAGCTGCATATAGAGGCCGGTTGTACTATGAAGCAATGAATGAAACCAAATCTGCTCGCTCTGCCACTACTCGATCTTCTTCGGCAGTTTCTAATTTAAATGATGAAGGGTGTTACAAGTTGCACCCCGATGTGGAAAACCTGATGTTCTTCATTTGA 2910 0.4478 MERGRGSYGDRGSGSYGGGDGNADRYTSRDRYGSAGRSSYGGGDSYGGRRGRFYQRPQLSSGNEQRSPSQPQPQARWQPKVNPSSAGESSEPHGSQPQTETEKQTIQNPEVGALRISEQKAESIRPMHRPDKGGTMAAQRNTLEVNHFHVVFDEKRVIFHYEVDVKAKAPPLNNRPQKISKFHQLLIRDKLFSDHAFPTSAYDGEKNMFSAERLTEGTFDVEVVKGGDARRMVCYSVTLTLVKVLELRKLRDYLSGKVLSIPRDVLQGLDLAAKENPAKQCDKVGCCFFPKDHPISVRDSKGIIATGGFQQSLKPTSQGLSLCLDYSVLSYFGEDKPVLNFLHEQIENFNLGMFPKFKKRVEDLLVGLKVNVTHRRTKQKYTIARLTPMVTRKIRFPVLDTKGWNPEPECSLIDYFFRKHQVEIQHKDIPALDFGGNKMNYVPMELCVLVKDQRCPKGNLLNTDAGNMLRSMSLASAGERRNKIRTIVKSKEGPCGGGVIESFGMRVHTSMTKVTGRVIQPPELKIANRSGGIISMALEVGKPQWNLKEGSMVEGKPLKCWGILYFADSKCQFKSEQFIKNIRRKCGLLGIEMGKPAWSEEFSISILRKYDSLCELLKKIDCEVQQRCEQRLQILLCVMAEKDSGYKCLKWIAETKVGVVTQCCLRSHANDAKDHFLTNLVLKMNAKVGGSNVELMNRLPNFDGQGHVMFIGADVNHPASRDNNSPSIAAVVATVNWPAANRYAARVCAQRHRVEKILNFGRICRELVSYYNRLNKVWPEKIVIFRDGVSESQFHMVLTEELEDLKSVFRDSNHSPTITLIVAQKRHHTRFFVKDRNFNVLPGTVVDTKVVHPFEFDFYLFSHEGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRLYYEAMNETKSARSATTRSSSAVSNLNDEGCYKLHPDVENLMFFI 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01889 969 Pfam Piwi domain 635 927 IPR003165 GO:0003676
Phco4g01889 969 CDD Piwi_ago-like 499 927 IPR045246 -
Phco4g01889 969 CDD PAZ_argonaute_like 337 450 - -
Phco4g01889 969 Gene3D - 518 696 - -
Phco4g01889 969 Gene3D - 704 969 IPR036397 GO:0003676
Phco4g01889 969 Pfam N-terminal domain of argonaute 142 271 IPR032474 -
Phco4g01889 969 Gene3D paz domain 330 456 - -
Phco4g01889 969 SUPERFAMILY Ribonuclease H-like 623 929 IPR012337 -
Phco4g01889 969 MobiDBLite consensus disorder prediction 56 112 - -
Phco4g01889 969 Pfam Argonaute linker 1 domain 284 328 IPR014811 -
Phco4g01889 969 SUPERFAMILY PAZ domain 331 489 IPR036085 GO:0005515
Phco4g01889 969 Pfam PAZ domain 355 459 IPR003100 GO:0005515
Phco4g01889 969 ProSiteProfiles PAZ domain profile. 367 451 IPR003100 GO:0005515
Phco4g01889 969 SMART Piwi_a_2 634 928 IPR003165 GO:0003676
Phco4g01889 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 138 933 - -
Phco4g01889 969 ProSiteProfiles Piwi domain profile. 634 928 IPR003165 GO:0003676
Phco4g01889 969 SMART PAZ_2_a_3 336 474 IPR003100 GO:0005515
Phco4g01889 969 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01889 Phco-Chr4 37459083 37462890 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01889 4 37459083 37462890 Phco4g01889 4 37459083 37462890 ECH
Phco4g01889 4 37459083 37462890 Phco8g00355 8 3264410 3266079 PCT