Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01872 ATGGGGCACGACCAGAACCAGAGATCTCTGATCTACGCGTTCGTCTCTCGCGGCACCGTGATTCTTGCTGAGTACACCGAATTCAGCGGCAACTTCAACACCATCGCTTTTCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAATAAATTCACCTACAACTGCGACGGCCACACCTTCAATTACCTAGTCGACAACGGATTTACGTATTGTGTTGTTGCGGATGAGTCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGCGTGAAGGATGATTTTCTTGCCAAGTACGGCGGCGGGAAGGCGGCGACAGCAGCCGCCAACAGCCTGAACAAGGAATTCGGGTCCAAGTTGAAGGAGCATATGCAGTACTGTCTTGAGCACCCCGAAGAGATAAGCAAGCTTGCTAAAGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAACATTGAGAAGGTTCTGGACAGAGGGGAAAAGATAGAGCTTCTGGTAGACAAGACTGAAAATCTTCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATCCGTAGAAAAATGTGGCTGCAAAACATGAAGGTAAAGCTGATTGTGTTGGCAATTTTGATAGCCCTGATCCTCATAATAGTCCTCTCTGTTTGCCGTGGGTTCAATTGTGGAAAAAATTAA 681 0.4816 MGHDQNQRSLIYAFVSRGTVILAEYTEFSGNFNTIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGFTYCVVADESIGRQVPVAFLERVKDDFLAKYGGGKAATAAANSLNKEFGSKLKEHMQYCLEHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKVKLIVLAILIALILIIVLSVCRGFNCGKN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01872 226 FunFam Vesicle-associated membrane protein 722 5 131 - -
Phco4g01872 226 PANTHER SNARE PROTEINS 7 219 - -
Phco4g01872 226 Pfam Regulated-SNARE-like domain 38 114 IPR010908 -
Phco4g01872 226 SUPERFAMILY SNARE fusion complex 129 196 - -
Phco4g01872 226 CDD Longin 11 125 IPR010908 -
Phco4g01872 226 SMART Longin_2 35 117 IPR010908 -
Phco4g01872 226 Gene3D Longin domain 1 131 - -
Phco4g01872 226 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
Phco4g01872 226 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 134 194 IPR042855 -
Phco4g01872 226 SUPERFAMILY SNARE-like 10 125 IPR011012 -
Phco4g01872 226 Gene3D - 132 218 - -
Phco4g01872 226 PRINTS Synaptobrevin signature 139 158 IPR001388 GO:0016020|GO:0016192
Phco4g01872 226 PRINTS Synaptobrevin signature 195 214 IPR001388 GO:0016020|GO:0016192
Phco4g01872 226 PRINTS Synaptobrevin signature 159 178 IPR001388 GO:0016020|GO:0016192
Phco4g01872 226 FunFam Vesicle-associated membrane protein 726 132 218 - -
Phco4g01872 226 ProSitePatterns Synaptobrevin signature. 152 171 IPR001388 GO:0016020|GO:0016192
Phco4g01872 226 Pfam Synaptobrevin 133 218 IPR042855 -
Phco4g01872 226 CDD R-SNARE 134 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01872 Phco-Chr4 37120424 37125515 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01872 4 37120424 37125515 Phco4g01872 4 37120424 37125515 ECH