Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01804 ATGGCGGTTTTACCGAGTACCTCCTCCACCTTGGAATTGACCATATCCATCCCTGGCTTTGCTTCTTCACCAACTCTTCTGCCTTCATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAAACAGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACCCTAAACCCAAAGCAGAAAGAGGCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACCGAAGGCTTCAGAGGGAAGTGGAGGAACTGAGGGCCATGAAGGTGGGGCCACCCACCGTAATTTCCCCACAGTTTTGTGAGCTACGCCCAGCCTCCACACTAACCATGTGTCCCAGCTGTGAGCGCGTCAAAACCACCGCCGACAAACCGCCATCCGCCGCCGCCACTTTGTCCGCTAAAGTTCCCGCGCAGTCCCCTCAACCTTCTGCCGCCTGTTGA 639 0.5211 MAVLPSTSSTLELTISIPGFASSPTLLPSSSVKELDINQVPLEEDWMASNMEDEEENSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPQFCELRPASTLTMCPSCERVKTTADKPPSAAATLSAKVPAQSPQPSAAC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01804 212 Coils Coil 133 153 - -
Phco4g01804 212 MobiDBLite consensus disorder prediction 198 212 - -
Phco4g01804 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 33 198 - -
Phco4g01804 212 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Phco4g01804 212 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Phco4g01804 212 MobiDBLite consensus disorder prediction 184 212 - -
Phco4g01804 212 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Phco4g01804 212 CDD homeodomain 63 121 IPR001356 GO:0003677
Phco4g01804 212 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Phco4g01804 212 Gene3D - 56 127 - -
Phco4g01804 212 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Phco4g01804 212 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Phco4g01804 212 SMART HOX_1 62 124 IPR001356 GO:0003677
Phco4g01804 212 FunFam Homeobox-leucine zipper protein 18 48 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01804 Phco-Chr4 34554902 34557981 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g01804 Homeodomain 2.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01804 4 34554902 34557981 Phco4g01804 4 34554902 34557981 ECH