Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01787 ATGGCCGGCGAACTCGCCGGAGACCACACGCCAGAGCTCCTCTGTCTGGTCCATGACATCGCCGGAATGTGCCCTGGCTCCTCCTCCGCCACGCCCATTGCCGCCGACGCCCTGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTTGCCCACTTGTTCGAGGAGATTAGAGAACTCAACAACAGCAACAATGTTGTCTCTTCCGCTTCCTCCTCTTCTTCCTCCCCTTCCGCGGCATCTTGGTCATCTGATCTTGTCCTCGCTCTTCACTCTGCAAGAAGCTTGCTTTCCGTCGCCAGAAATTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGTAATTTGTCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCACAGAAAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTGCCAAATCCGTGGGTGGATTGTACAAACAACATAGCTGTCCTGAAAATTTATCCGAACAAGACAGCATTTCTAAGAACAATGGAGAGAATAATAGCAGCAGTAATCGGGCTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCTGAAGTTTTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAGAGTCTCCCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTCACACCTAATTATGTTTTAAGGAGCCTTATTTATCAGTGGTGTATTGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGACGTTACGGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGTCGGTCTGTTGAGGAGCGTAGAGCAGCTGTTACCGAAATTCGATCACTATCCAAACGTAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCAAGTTCTAGTCAACCTTCTAACATCAGAAGATGTACTGACGCAAGACAATGCTGTTACATCAATTCTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATCATAATTGGTGCGTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCCGATAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTCTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1959 0.4513 MAGELAGDHTPELLCLVHDIAGMCPGSSSATPIAADALFRKDCTDLVRRISLLAHLFEEIRELNNSNNVVSSASSSSSSPSAASWSSDLVLALHSARSLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLSYDNLDISEEVKEQVDLVRTQLKRATEKYGFMISKMPSHELSQPLTEEISQVLAKSVGGLYKQHSCPENLSEQDSISKNNGENNSSSNRAGSRLERARSIPASSEVFFLNESDPESQEISETKSLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLIYQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIQVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01787 652 Coils Coil 632 652 - -
Phco4g01787 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Phco4g01787 652 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Phco4g01787 652 Coils Coil 145 165 - -
Phco4g01787 652 MobiDBLite consensus disorder prediction 203 230 - -
Phco4g01787 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515
Phco4g01787 652 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Phco4g01787 652 SUPERFAMILY ARM repeat 372 646 IPR016024 -
Phco4g01787 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
Phco4g01787 652 SUPERFAMILY RING/U-box 272 347 - -
Phco4g01787 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Phco4g01787 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515
Phco4g01787 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Phco4g01787 652 SMART arm_5 402 442 IPR000225 GO:0005515
Phco4g01787 652 SMART arm_5 525 565 IPR000225 GO:0005515
Phco4g01787 652 SMART arm_5 484 524 IPR000225 GO:0005515
Phco4g01787 652 SMART arm_5 566 606 IPR000225 GO:0005515
Phco4g01787 652 SMART arm_5 443 483 IPR000225 GO:0005515
Phco4g01787 652 Gene3D - 448 552 IPR011989 -
Phco4g01787 652 Gene3D - 355 447 IPR011989 -
Phco4g01787 652 FunFam RING-type E3 ubiquitin transferase 351 551 - -
Phco4g01787 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
Phco4g01787 652 FunFam RING-type E3 ubiquitin transferase 272 347 - -
Phco4g01787 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 413 IPR000225 GO:0005515
Phco4g01787 652 PANTHER U BOX DOMAIN-CONTAINING 40 648 - -
Phco4g01787 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515
Phco4g01787 652 Pfam Armadillo/beta-catenin-like repeat 403 441 IPR000225 GO:0005515
Phco4g01787 652 Gene3D - 553 651 IPR011989 -
Phco4g01787 652 MobiDBLite consensus disorder prediction 201 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01787 Phco-Chr4 33440286 33443239 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01787 4 33440286 33443239 Phco4g01787 4 33440286 33443239 ECH