Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01154 ATGGGAGCAGCTCAGAAGTGGACGCGTGTCTTAAGACAGCTGTATCCCAAATCCCAAGCCAACCGCTTCCCTGGAACAAGCGCAGAGGAAGCAAATACTCCACGCCACAGGAGCCTCCCCCATTTCTATTTCCTTTCCATTCACCATACCATATTTATGAACGCAGGCGTTGTTCTTTCCAGAAAGGACATGGACCGTATCAAAGGCCCATGGAGCCCCGAGGAGGACGAGGCTCTGCAGAGGCTCGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATTCCTGGCCGCTCCGGCAAATCCTGCAGGCTCCGCTGGTGCAATCAGCTCTCCCCCCAGGTGGAGCACCGGGCCTTCACGCCCGAAGAGGACGACACCATAGTCAGAGCTCATGCTCGCTTCGGCAACAAATGGGCCACCATAGCCCGCTTGCTACAGGGCAGAACCGACAACGCAATAAAAAACCACTGGAATTCCACCTTGAAGCGCAAGTGCGCCTCAACCATGATGGACGACCACCCTCCACCGCTTAAGAGGTCCGTCAGTGCCGGCGCGGCCATCCCCGTCTCCACCGGCCTCTACATCAACCCTCCCACACCTGGTAGTCCCTCCGGATCCGATGTGAGTGAATCCAGCGTACCAGTTGCCTCCCCCTCACACGTCTTCCGTCCCGTGCCTAGGACCCCCGCGGTTCTTCCTCCCGTAGAAACTACCTCCTCCTCCTCCAATGACCCTCCAACTTCCCTTTCACTGTCCCTCCCCGGTGTCGACTCTTCCGAGGTCTCCAATCGGGTAACCGAGCCAGCCCATCCAGTACCGCCGCCACAGCCCTCGAACACCATCCCTTTGCTGCCAATGATGACTGCTCCGGTGGCGATGGTGCCGCAGTTGAAGCCACCGGGGTTGGGGCCTTTCAATCTAAGTGCAGAGTTTTTGGTGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCGCCAGAATCCGAATGGGATGTGTTTTCAGGCAGCAGAGGATGGCTTTAGGAATACTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGATTCGTAA 1092 0.5714 MGAAQKWTRVLRQLYPKSQANRFPGTSAEEANTPRHRSLPHFYFLSIHHTIFMNAGVVLSRKDMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASTMMDDHPPPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVFRPVPRTPAVLPPVETTSSSSNDPPTSLSLSLPGVDSSEVSNRVTEPAHPVPPPQPSNTIPLLPMMTAPVAMVPQLKPPGLGPFNLSAEFLVVMQEMIRKEVRSYMERQNPNGMCFQAAEDGFRNTSVKRIGISRVDS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01154 363 Gene3D - 121 184 - -
Phco4g01154 363 Gene3D - 67 119 - -
Phco4g01154 363 SUPERFAMILY Homeodomain-like 65 161 IPR009057 -
Phco4g01154 363 CDD SANT 122 165 IPR001005 -
Phco4g01154 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 118 IPR017930 -
Phco4g01154 363 SMART sant 119 167 IPR001005 -
Phco4g01154 363 SMART sant 67 116 IPR001005 -
Phco4g01154 363 Pfam Myb-like DNA-binding domain 122 164 IPR001005 -
Phco4g01154 363 Pfam Myb-like DNA-binding domain 68 114 IPR001005 -
Phco4g01154 363 ProSiteProfiles Myb-like domain profile. 115 165 IPR001005 -
Phco4g01154 363 FunFam MYB transcription factor 68 119 - -
Phco4g01154 363 CDD SANT 70 112 IPR001005 -
Phco4g01154 363 ProSiteProfiles Myb-like domain profile. 63 114 IPR001005 -
Phco4g01154 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 169 IPR017930 -
Phco4g01154 363 FunFam Transcription factor MYB44 122 168 - -
Phco4g01154 363 PANTHER MYB PROTEIN-RELATED 68 243 - -
Phco4g01154 363 MobiDBLite consensus disorder prediction 196 282 - -
Phco4g01154 363 MobiDBLite consensus disorder prediction 237 269 - -
Phco4g01154 363 MobiDBLite consensus disorder prediction 199 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01154 Phco-Chr4 9499515 9500698 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01154 Myb_DNA-binding 2.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01154 4 9499515 9500698 Phco8g01010 8 10515293 10516159 ECH
Phco7g00489 7 3583009 3584149 Phco4g01154 4 9499515 9500698 ECH
Phco2g00301 2 2458475 2459305 Phco4g01154 4 9499515 9500698 ECH
Phco4g01154 4 9499515 9500698 Phco4g01154 4 9499515 9500698 ECH
Phco4g01154 4 9499515 9500698 Phco8g00032 8 321771 322694 PCT
Phco8g01010 8 10515293 10516159 Phco4g01154 4 9499515 9500698 PCT