Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01149 ATGCCTCACCCACCCTCCCCCTCTTTCCTCCTCTGTCATGAACAACACTCCTCTTTCCAACAACATTCTCCAACTCTCATCACCACCCCATCTTCACCTTCCATTTTTTCCGACAACCACCTCTTCTCCCACCACGACCACCTTCTCTCTCTACTCTCCAAAGAGACCGCAACGCATTTCACTCCCTCCCCTTCCCACCACGTCGTACGCTGGATTTCTACACTTTCCCACTTCCACGGTTTCGCTCCTCTAACCACCGTTCTTGCTGTGAACTACTTCTACAGGTTCGTTAACAGAAGAAGCTTTCAGAGCGAAGATAAACCATGGAGGACTCAACTAACAGCCATTGCTTGCGTCTCTCTCGCGGCCAAAGTGGAAGAGACACGAGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGAAATTTGTGTTTGAAGCGAACACCATACATACAATGGAGCTCCTCGTGCTGTCCACTCTCGAATGGAAAATGAACCCTGTCACCCCAATCTGTTTCTTTCAACACTTTCTCACAAGGCTTGCTTTAAAGCCTCACTTGCACTGGGAATTTCTGTGTGGGTGCCAACATGTTCTTCTCTCTGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTATAATGATCCATGTTATTGAAGAGATTGAACCATTGAATGCTTGGGAGTACCGAAATCAGCTTCTTGGTTTACTCAGAAGTAGTGAGGAGCAAGTGAATGAGTGCTACAAACTGATCTTGGGACTATTAGTTTGCTGTGAAGGGATTCACAATCCTGGTCAGAGGCGCAAACGTTTCTCTGAGCCAAGTAGTCCTGATGGGGTCATTGATGCATCTTTCTGCTGTGAAAGTTCAAATGATTCATGGTCAGTGGCATCACTTTCTGTGGAGCCAGACTTTAAGAGGAGGAAAGCTCAGGACCAGCAGATGCGTTTGCCTTCGGTGGATCGAGTGTCTATTGGTGTTCTAAATATCCCTCGTTAA 1020 0.4706 MPHPPSPSFLLCHEQHSSFQQHSPTLITTPSSPSIFSDNHLFSHHDHLLSLLSKETATHFTPSPSHHVVRWISTLSHFHGFAPLTTVLAVNYFYRFVNRRSFQSEDKPWRTQLTAIACVSLAAKVEETRVPLLLELQVEESKFVFEANTIHTMELLVLSTLEWKMNPVTPICFFQHFLTRLALKPHLHWEFLCGCQHVLLSVIADSRVMSYLPSTLAAAIMIHVIEEIEPLNAWEYRNQLLGLLRSSEEQVNECYKLILGLLVCCEGIHNPGQRRKRFSEPSSPDGVIDASFCCESSNDSWSVASLSVEPDFKRRKAQDQQMRLPSVDRVSIGVLNIPR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01149 339 Gene3D - 57 166 - -
Phco4g01149 339 SMART cyclin_7 70 159 IPR013763 -
Phco4g01149 339 FunFam D6-type cyclin 46 166 - -
Phco4g01149 339 SUPERFAMILY Cyclin-like 46 166 IPR036915 -
Phco4g01149 339 CDD CYCLIN_AtCycD-like_rpt2 168 258 - -
Phco4g01149 339 Pfam Cyclin, C-terminal domain 168 268 IPR004367 -
Phco4g01149 339 FunFam CYCLIN D32 167 256 - -
Phco4g01149 339 Gene3D - 167 256 - -
Phco4g01149 339 Pfam Cyclin, N-terminal domain 60 166 IPR006671 -
Phco4g01149 339 CDD CYCLIN_AtCycD-like_rpt1 69 163 - -
Phco4g01149 339 SMART Cyclin_C_2 168 296 IPR004367 -
Phco4g01149 339 PANTHER CYCLINS 63 259 IPR039361 -
Phco4g01149 339 SUPERFAMILY Cyclin-like 149 263 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01149 Phco-Chr4 9456315 9457620 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01149 4 9456315 9457620 Phco8g01014 8 10578986 10580446 ECH
Phco7g00486 7 3549156 3550764 Phco4g01149 4 9456315 9457620 ECH
Phco2g00298 2 2409610 2411136 Phco4g01149 4 9456315 9457620 ECH
Phco4g01149 4 9456315 9457620 Phco4g01149 4 9456315 9457620 ECH
Phco4g01149 4 9456315 9457620 Phco6g02826 6 49494196 49495884 PCT
Phco8g01014 8 10578986 10580446 Phco4g01149 4 9456315 9457620 PCT