Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00894 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTGGCTAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAGATCCGGGTTCACAACCATTGGAACCTGGTGAGACTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAGCAAAATCATGGGATGCCTCTGCTTCCAATGCCAGGACCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGATTGCATGAACAGGCATCAAATAATCAGGTTAGAGTGTTTGGGAAGTAA 570 0.4474 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAEDPGSQPLEPGETKRGQNPLPKLKMGEKQQNHGMPLLPMPGPDADGHTKMETKMIDLNMKPNRLHEQASNNQVRVFGK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00894 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
Phco4g00894 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Phco4g00894 189 FunFam B-box zinc finger protein 19 2 92 - -
Phco4g00894 189 CDD Bbox1_BBX-like 56 96 - -
Phco4g00894 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 127 - -
Phco4g00894 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Phco4g00894 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco4g00894 189 CDD Bbox1_BBX-like 4 47 - -
Phco4g00894 189 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Phco4g00894 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Phco4g00894 189 Gene3D Classic Zinc Finger 2 91 - -
Phco4g00894 189 MobiDBLite consensus disorder prediction 105 159 - -
Phco4g00894 189 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00894 Phco-Chr4 7045351 7046704 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco4g00894 zf-B_box 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00427 8 3881695 3883435 Phco4g00894 4 7045351 7046704 ECH
Phco4g00894 4 7045351 7046704 Phco4g00894 4 7045351 7046704 ECH
Phco7g00120 7 805462 806557 Phco4g00894 4 7045351 7046704 ECH
Phco9g00466 9 3378528 3379837 Phco4g00894 4 7045351 7046704 ECH
Phco4g00894 4 7045351 7046704 Phco8g00427 8 3881695 3883435 PCT