Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03040 ATGTTCCCTTCCTCTAATTACACCTCAGGTTCTTACCCTCGTTTCCCTTCTTCGTCTTCTTCTACTTCGCCGTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCGGCTAGCAGCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCAACTAATTATCATGCTCCAATACCTGAAACACTAGCCAATTGGGCAGTTGCAGATTATGCTGCTGCGGCAATGCTCAATCAGGATCTCGGCGGTGCTCTTTATGGCATCACCAAAAAACCAGCGAAGAAAACGACCAAGAAAGACAGGCACAGCAAGATTCACACATCTCAAGGCTTGAGGGACCGAAGGGTGAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTAACTCGCAGCAAGCACAGTGTTGATAGCTTCGAATTCTCCTCATCTTCAGATGGTGAAGTGGTTTCTGTGATCCACCAAGACCAACAACATCAAGGGGTAGACTTGGAAGAGGGGAAGTTGAAAGAACCTGTTTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTTGCAAGATATTGTGCAGTGGGGAAGGGACGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCATGAAATCCTGAACCAATTAAGGTCACCCCCTCAACCTCAGCCTCAAGATGTGGATGGAGGAATGCCAAGAGATGATGACTTCAACGTTATTGAAGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCAGCAAAACGCTGTGATCCCAAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGCTGCCAATGGACGCTCCGCCTTTTGTGCAATAGCCAGCATGAATCTATCAGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1095 0.4548 MFPSSNYTSGSYPRFPSSSSSTSPYPSFTFLHPENSSASSTFLHDPLSVTFIPTNYHAPIPETLANWAVADYAAAAMLNQDLGGALYGITKKPAKKTTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVDSFEFSSSSDGEVVSVIHQDQQHQGVDLEEGKLKEPVYCVKAKMKESREKARARARERTSCKILCSGEGTVQELKKKCPATENHEILNQLRSPPQPQPQDVDGGMPRDDDFNVIEESIVIKRKLKHSLMSSIHQQNAVIPKEASVNNSDYHSFPNLSPNWEANNAANGRSAFCAIASMNLSAGLQIFGKSWEECTNPHPT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03040 364 ProSiteProfiles R domain profile. 209 226 IPR017888 -
Phco3g03040 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 91 328 IPR005333 GO:0003700
Phco3g03040 364 Pfam TCP family transcription factor 97 226 IPR017887 -
Phco3g03040 364 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Phco3g03040 364 MobiDBLite consensus disorder prediction 250 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03040 Phco-Chr3 56532524 56533726 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco3g03040 TCP 5.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03040 3 56532524 56533726 Phco8g01492 8 15343161 15344658 ECH
Phco3g03040 3 56532524 56533726 Phco3g03040 3 56532524 56533726 ECH
Phco7g02390 7 41810660 41812233 Phco3g03040 3 56532524 56533726 ECH