Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02968 ATGTATGATGATAAGGAGATTGAGGATGAAGGTTGTGTAATGTTATGGTTTAGGCTTGATATCACTAGGCACGATCTCAGTTTTGTTCCTAGTAGAAAAAGAGGAGAAGTGAGAAGGGAGGAGGCGCCGTCAACCAATGAGAAGCAAAGGCTGAGTGCCATACACACAACACAACAACCACATTCCGGTTGCTATCTTATCCGTGGGACCCACATCCTCGTACGGTCTGTCTCCCTACGTTACGCCCTGTCAACACGACACTTCACTCCTCTTCAATTCCATCTCGACAACGCATCACACCCTCCATTTCTTTTCCTTTCCTCTTCTTTTTCTCTTTCTCTTTCTCAGTCTCCGTTTCTTCAGCATACTACTGAGATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCCAAGAGGAGAACGGGACTTCTCAAGAAAGCGCACGAAATCTCTGTGCTTTGTGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTTACTGGAACCAACAATGACTCGGAGGGCAATTGGTCTTTCGAATATATCAAGCTCAACGCTAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAGCTTGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACGCATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCACGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGATGAAGGAGAAAGGGAAGACATTGACTGAACGTCCACAGATCGTACCAGAAACTCTTGGCCAAAATTCAACCAACCTCAATTTATGTTCTCCACAACTATTACCATCACAAAGACTTTTAACTCTCAGTGGGACATTGCAAGGAAGAACAAGGGTGGAGGAAAGGGGTGAAGCTCAAACAGTGCCAACTGCTAATTCACTCATCCCACCATGGATGCTGCACATCTGA 1107 0.4453 MYDDKEIEDEGCVMLWFRLDITRHDLSFVPSRKRGEVRREEAPSTNEKQRLSAIHTTQQPHSGCYLIRGTHILVRSVSLRYALSTRHFTPLQFHLDNASHPPFLFLSSSFSLSLSQSPFLQHTTEMGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDASLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKMKEKGKTLTERPQIVPETLGQNSTNLNLCSPQLLPSQRLLTLSGTLQGRTRVEERGEAQTVPTANSLIPPWMLHI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02968 368 Coils Coil 245 304 - -
Phco3g02968 368 ProSiteProfiles K-box domain profile. 211 301 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g02968 368 SUPERFAMILY SRF-like 127 214 IPR036879 GO:0003677|GO:0046983
Phco3g02968 368 Pfam K-box region 208 294 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g02968 368 Gene3D - 138 209 IPR036879 GO:0003677|GO:0046983
Phco3g02968 368 CDD MADS_MEF2_like 127 200 IPR033896 GO:0000977|GO:0045944
Phco3g02968 368 ProSiteProfiles MADS-box domain profile. 126 186 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 MobiDBLite consensus disorder prediction 32 54 - -
Phco3g02968 368 PRINTS MADS domain signature 148 163 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 PRINTS MADS domain signature 163 184 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 PRINTS MADS domain signature 128 148 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 SMART madsneu2 126 185 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 FunFam MADS-box transcription factor MADS-MC 138 211 - -
Phco3g02968 368 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 135 182 IPR002100 GO:0003677|GO:0046983
Phco3g02968 368 MobiDBLite consensus disorder prediction 32 46 - -
Phco3g02968 368 PANTHER SERUM RESPONSE FACTOR HOMOLOG 128 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02968 Phco-Chr3 56034011 56044957 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco3g02968 K-box 2.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02968 3 56034011 56044957 Phco3g02968 3 56034011 56044957 ECH
Phco3g02968 3 56034011 56044957 Phco8g00202 8 1885227 1890589 ECH
Phco5g01537 5 51203448 51218346 Phco3g02968 3 56034011 56044957 PCT