Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02899 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACAATGGCAGTCATTGCAGTTAAGTGCCCATCCATTGAAGTGGCTGTTGTGGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGTGACCAGCTTCCTATCTATGAACCTGGTCTTGATGGTGTTGTGAAGCAGTGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTCAACACCCCAACTAAAACTCAGGGTCTTGGAGCTGGCAAAGCAGCAGATTTGACATATTGGGAGAGCGCAGCTCGCATGATTGCTGATGTCTCAAAGTCTGACAAGATTGTGGTAGAGAAATCCACTGTCCCAGTCAAAACTGCTGAGGCCATAGAGAAGATTCTAACCCACAACAGCAAGGGAATCAAATTCCAGATTCTATCAAACCCAGAATTCCTTGCTGAGGGAACTGCAATCCAAGATCTCTTTAAACCAGATCGTGTTCTTATCGGAGGCAGGGAGACCCCTGAGGGCCAAAAAGCTATTCAAGCTTTGAAGAATGTTTATTCTCAATGGGTTCCCGAAGAAAGGATACTCACCACAAATCTCTGGTCTGCAGAACTGTCTAAGCTTGCTGCCAATGCTTTCTTGGCCCAAAGGATTTCATCTGTTAATGCCATGTCAGCACTTTGTGAGGCTACCGGGGCAAATGTTCAACAGGTGTCCTATTCTGTTGGTACGGACTCAAGGATTGGACCCAAGTTCCTCAATGCTAGTGTTGGTTTTGGTGGATCGTGCTTCCAGAAGGATATCTTGAACCTTGTTTACATCTGTGAGTGCAATGGCCTTCCAGAGGTGGCCGAGTATTGGAAACAAGTTATCAAGATCAATGACTATCAGAAGAGCCGTTTTGTGAACCGTGTAGTTTCATCAATGTTCAACACTGTTTCAAACAAAAAGATTGCTATTCTTGGATTTGCCTTCAAGAAAGACACTGGTGATACAAGGGAGACCCCAGCCATTGATGTTTGCCAGGGGCTACTTGGCGATAAGGCCAACCTGAGCATATATGATCCACAGGTAACTGAGGACCAAATCCAGAGGGATCTATCAATGAACAAGTTTGATTGGGATCATCCTATCCACCTGCAGCCCACAAGTCCCACTACTGTGAAGAAAGTCAGTGCGGTTTGGGATGCCTATGAAGCAACAAAGGATGCACATGGTCTTTGCATTCTAACCGAGTGGGATGAGTTCAAGACTCTTGATTACCAGAGGATATTTGACAACATGCAAAAACCAGCATTTGTTTTTGATGGCAGAAACGTTGTGGATGCTGATAAGCTACGTGAGATTGGCTTCATAGTTTACTCAATTGGTAAGCCACTGGATCCATGGCTCAAAGACATGCCTTCTATGGCATAA 1443 0.4532 MVKICCIGAGYVGGPTMAVIAVKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFKPDRVLIGGRETPEGQKAIQALKNVYSQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSAVWDAYEATKDAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDADKLREIGFIVYSIGKPLDPWLKDMPSMA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02899 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Phco3g02899 480 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Phco3g02899 480 Gene3D - 241 476 - -
Phco3g02899 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Phco3g02899 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Phco3g02899 480 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
Phco3g02899 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Phco3g02899 480 Gene3D - 209 240 - -
Phco3g02899 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Phco3g02899 480 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Phco3g02899 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Phco3g02899 480 Gene3D - 1 208 - -
Phco3g02899 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 477 IPR028356 GO:0003979
Phco3g02899 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Phco3g02899 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Phco3g02899 480 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
Phco3g02899 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02899 Phco-Chr3 55435786 55437228 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02899 3 55435786 55437228 Phco3g02899 3 55435786 55437228 ECH
Phco3g02899 3 55435786 55437228 Phco8g01394 8 14448262 14449710 ECH
Phco4g01927 4 38235842 38237287 Phco3g02899 3 55435786 55437228 ECH
Phco5g01594 5 51884035 51886678 Phco3g02899 3 55435786 55437228 PCT