Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02838 ATGTCCACTCCCAACGCCCACTCCGACACGGCGCCGCATCCGCGCCCCACCATCACACTCCCTCCGCGTCCCTCCGCGGAAGCCTTTTTCTCCGCCGCCGGCGGCGCTAGCCCCGGTCCCATGACCCTCGTGTCTAGCTTCTTCGGTTCCGATGCCGCCGCCGACTGCCGCTCCTTCTCCCAGCTTCTTGCCGGTGCCATGGCCTCCCCGATGGCCTTCTCCGCCGCCGTGGCCGACAACTCCGGCAAGGACGACGATGGGCCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTATTCACTGTCCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGTCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATATGCACATGCAAGCTGATTACCAAATGCATGCAGTAACAGCTCCTACTGAACCACCTCTACAGCAGCCATCTTTTGCTCTAAATGAAGCTTCGGAGCAGCAAATAGTTTCATCTGTACCAGAAACTAAAAATACTCAAATGGAAACGTCAGATATCTCGCAGGCTGACAAGAAATATCAGCTGGTTTCCCAGGCCATTGACAAACCTGCAGATGATGGCTATAACTGGCGCAAGTATGGGCAGAAGCAGGTTAAGGGCAGCGAGTATCCACGAAGCTACTACAAATGTACACATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAACTCACAAGGTTGGGTAGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGACCAGATTTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGAGAGCGAGGAAGTGGGTGATGTAGATAACAGGGAAGATGCAGATGACATTGAGCCAAACCCTAAGAGAAGGAATACTGATCTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTAACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGGAACCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATACCAATTCAGTGCCATTAAAACCGCACAGTGTCGTACCACCAGAGAAGCACCCTTTGCTTAAAGATATGGACTTTGGAAATAATGACCGAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA 1560 0.4878 MSTPNAHSDTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSAAVADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHAVTAPTEPPLQQPSFALNEASEQQIVSSVPETKNTQMETSDISQADKKYQLVSQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPESDQISNQGAPRQLLPGSSESEEVGDVDNREDADDIEPNPKRRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANTNSVPLKPHSVVPPEKHPLLKDMDFGNNDRRPVHLRLKEEQIIV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02838 519 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 Gene3D WRKY domain 208 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 Gene3D WRKY domain 389 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 FunFam WRKY transcription factor 33 391 457 - -
Phco3g02838 519 MobiDBLite consensus disorder prediction 272 383 - -
Phco3g02838 519 MobiDBLite consensus disorder prediction 289 344 - -
Phco3g02838 519 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 FunFam WRKY transcription factor 211 283 - -
Phco3g02838 519 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 122 481 IPR044810 GO:0003700
Phco3g02838 519 MobiDBLite consensus disorder prediction 1 32 - -
Phco3g02838 519 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 MobiDBLite consensus disorder prediction 272 288 - -
Phco3g02838 519 MobiDBLite consensus disorder prediction 461 487 - -
Phco3g02838 519 SUPERFAMILY WRKY DNA-binding domain 221 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02838 519 MobiDBLite consensus disorder prediction 466 482 - -
Phco3g02838 519 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02838 Phco-Chr3 54814970 54820165 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02838 WRKY 1e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02838 3 54814970 54820165 Phco3g02838 3 54814970 54820165 ECH