Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00587 ATGGAAGACGCCAATGTAGTGAAAGGTGAATGTTCAAGCAGTGGGAAGGGGAAGAAGATGTTTGAGGAAGAAGAAAATGAAGACAAGTTGTTGGCAGGTGTAGGATACAAAGTGTGTTCCTCAGACATGGTTGACGTGGCACACAAGCTCGACCAATTGGAGATGGTGATGGAGGGAGATGGAATTTCCCATCTCGCCACCAACACCGTGCATTACGACCCAACCGATCTCTACGGCTGGGTCCAGAACATTCTCAACAACGCGCCCAATCACATCACCACCACCACCAACAACGCTCTCATTCCATCGCCGTTAATCACCGTCCCCGAGAACGATCTAAGAACGATTCCATTACCATACATCGAAGCCTATCCACAAACAGAAAATCAGAATTGCCACAGGCTATTTAAGAGCTTCTCGTCTCCGTGGTCGCCCGCGATATCATCGGACAACGTGCTTCCGGTGGTTCTGATGGAGGAGGCCGGCGTGCATCTCGTCCACGCGCTCATGGCCTGCGCGGAGGCCGTTCAATTAGGAAACGCGAGCCTCGCGGAAGTCCTCGTGAAGCATGCAGGAACCCTTGCTGCGTCGCAAGGAGGTTCAATGGGGAAAGTCGCGTCGTTCTTCGCTCAAGCTCTTGCTCGAAGAATATACGGCTTCTACCCTCACGAGACTCTAGACTCTTCTTACTCCGACATGCTTCACACACATTTCTACGAATCGAGCCCGTACCTCAAATTCGCGCACTTCACGGCGAACCACGCAATCCTCGAAGCCTGCGCCGCCGCGGACACGGTGCATGTTATCGATTTTGGCCTGAAGCAGGGGTTGCAATGGCCGGCGTTCATGCAAGCGCTCGCGGTCCGTCCGGGAGGTCCACCAGCGTTCCGTCTCAGTGGAATAGGACCGCCGAGGCTCGACGACCCCGATTCCAGCACGCTTAGTCAGGTTGGTTTGAAACTGGCGGAACTCGCTCGAAAAGTTAGGATTCAATTCGAGTTCCGCGGATTTGTGTGTAACAGTTTAGCGGATCTAGATCCGTCCATGCTCGAGATCCGAGCCGGAGAATTCGTCGCGGTTAACTCTATCTTCGAGCTTCATCGCTTACTTGCGCGACCGGTTGACATTGAAAAGGTGTTAGAAACGATTAAGAGGATTAAGCCGGAGATTGTTACCGTGGTGGAGCAAGAAGCGAATCACAACAGTCCGGTTTTTCTGGAGCGGTTCACGGAGGCTTTGTACTATTACTCGAGTTTGTTTGACTCGTTGGAGGGATCGGTGGCAGCGCCAAGTGAAGAGGCGTTGGTAATGGCGGAGATGTACTTGGGGAGGCAGATATGTAACGTTGTGGCTTGTGAGGGGGATGAGCGCGTGGAGAGGCACGAAACGCTGGGTCAGTGGAGAGGGCGGTTCGGTTTAGGCGGCTTGGAACCGGTTCGTTTGGGTTCGAACGCGTTCAGACAAGCGAGGATGTTGCTGGGCCTATACGCGGAGGGGGGAAAAGGGTATAGAGTGGAAGAAAACAATGGGTGCCTCTTGCTTGGGTGGCACACCAGGCCACTCGTTGCCTCCACCGCGTGGAGACTCGCGCCCAATGGCCTGCGTTGA 1608 0.5404 MEDANVVKGECSSSGKGKKMFEEEENEDKLLAGVGYKVCSSDMVDVAHKLDQLEMVMEGDGISHLATNTVHYDPTDLYGWVQNILNNAPNHITTTTNNALIPSPLITVPENDLRTIPLPYIEAYPQTENQNCHRLFKSFSSPWSPAISSDNVLPVVLMEEAGVHLVHALMACAEAVQLGNASLAEVLVKHAGTLAASQGGSMGKVASFFAQALARRIYGFYPHETLDSSYSDMLHTHFYESSPYLKFAHFTANHAILEACAAADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDDPDSSTLSQVGLKLAELARKVRIQFEFRGFVCNSLADLDPSMLEIRAGEFVAVNSIFELHRLLARPVDIEKVLETIKRIKPEIVTVVEQEANHNSPVFLERFTEALYYYSSLFDSLEGSVAAPSEEALVMAEMYLGRQICNVVACEGDERVERHETLGQWRGRFGLGGLEPVRLGSNAFRQARMLLGLYAEGGKGYRVEENNGCLLLGWHTRPLVASTAWRLAPNGLR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00587 535 Pfam GRAS domain family 165 528 IPR005202 -
Phco3g00587 535 MobiDBLite consensus disorder prediction 1 22 - -
Phco3g00587 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 138 523 IPR005202 -
Phco3g00587 535 Gene3D - 26 87 IPR038088 -
Phco3g00587 535 Pfam Transcriptional regulator DELLA protein N terminal 28 87 IPR021914 -
Phco3g00587 535 SMART DELLA_2 28 98 - -
Phco3g00587 535 ProSiteProfiles GRAS family profile. 156 528 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00587 Phco-Chr3 4774565 4776172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco3g00587 GRAS 3.2e-129 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00587 3 4774565 4776172 Phco3g00587 3 4774565 4776172 ECH
Phco2g02639 2 56112708 56114501 Phco3g00587 3 4774565 4776172 PCT