Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00579 ATGGCCACTGAGGAGGTTAGCAAACCTCAATCACTTCCTTCATACCCCGAGCTGATACTGAAAGCACTAGAAGCTCTGAATGAACCAAGTGGATCAAGCAAATCAGCAATATCAAAGTACATAGAATCGACCTATGGTGAGTTGCCAGACTCAACTGTTTTGGGGAATCAACTGAACAAGATGAAAGACAGTGGAGAGCTTGTGTTCAGTAAGAACAACTTCATGAAGCCTGACCCAAGTGCTCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGGCCCCTGTCTCACCAGGCACCGTCGTCTCCCCTCCAAGGCCAAGGGGTCGTCCCCCAAAGGACCCTAATGCCCCTCCAAAGTCCCCAAAGCCTAAAGCCACCCCTGGAAGTGGCAGGCCAAGAGGCAGACCAAAGAAGATTCCTCGATCTCCGACAGCGGCGTATCCGGCCGCCGTATCCAGCGGAAGGCCCAGGGGTAGGCCTCCTAAGGTGAAGCCTCAGTTGACAGAAGTGAGTGTTGAGTCATAG 531 0.5311 MATEEVSKPQSLPSYPELILKALEALNEPSGSSKSAISKYIESTYGELPDSTVLGNQLNKMKDSGELVFSKNNFMKPDPSAPPKRGRGRPPKPKAPVSPGTVVSPPRPRGRPPKDPNAPPKSPKPKATPGSGRPRGRPKKIPRSPTAAYPAAVSSGRPRGRPPKVKPQLTEVSVES 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00579 176 Gene3D - 7 88 IPR036388 -
Phco3g00579 176 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco3g00579 176 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Phco3g00579 176 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Phco3g00579 176 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Phco3g00579 176 PANTHER HISTONE H1 8 167 - -
Phco3g00579 176 FunFam HMG-Y-related protein A 7 87 - -
Phco3g00579 176 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
Phco3g00579 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco3g00579 176 MobiDBLite consensus disorder prediction 64 176 - -
Phco3g00579 176 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco3g00579 176 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco3g00579 176 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco3g00579 176 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco3g00579 176 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Phco3g00579 176 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Phco3g00579 176 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Phco3g00579 176 SMART AT_hook_2 156 168 IPR017956 GO:0003677
Phco3g00579 176 MobiDBLite consensus disorder prediction 92 127 - -
Phco3g00579 176 Pfam linker histone H1 and H5 family 13 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00579 Phco-Chr3 4699499 4700360 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00579 3 4699499 4700360 Phco3g00579 3 4699499 4700360 ECH
Phco2g02636 2 56089056 56090120 Phco3g00579 3 4699499 4700360 PCT