Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00540 ATGGGAGAAGAGAGAACGCGTAATGCATGTCGGTTGGTGTGGGGTTACTTCCAACGCACTTCTTTGTCTTTCTACCTCTCGCGATTATCGAGCGCCATGGTTCTCTCCAAAACAGCCTCGCAGACGGACGTTTCTGTCCATTCAACCTTCGCCTCTCGCTATGTGCGCACTGCTCTTCCAAGGTTCAAGATGGGAGAGCTTTCGATCCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGTTAGATGGAAATCCAAGGCTGAACCTGGCGTCGTTTGTGACGACGTGGATGGAGCCTGAATGTGACAAACTCATTATGGCTGCCATTAACAAAAACTATGTGGACATGGATGAGTACCCTGTCACCACTGAACTCCAGAACCGTTGCGTTAACATGATAGCTCACCTTTTCAATGCACCACTCGAAGAGTCAGAAATTGCAGTTGGTGTTGGTACTGTTGGCTCATCAGAGGCCATAATGCTGGCTGGATTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAAGAACAAGGGAAGTCTTGTGATAGTCCCAACATTGTTACAGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGAGTGATGGATACTTTGTAATGGACCCTGAAAAAGCAGCGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTTTGAACGGAGAGTTTGAAGATGTGAAGCGCTTAAATGATCTGCTAGTACAAAAGAATCAGGAAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCCTTTATTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTGATTTGGAGAACCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAATTATTGCTCAGTACTACCAACTAATTCGATTAGGTTATGAGGGATATAAAATGGTGATGGAAAACTGCAGAGACAACATGCAAGTGCTTAAGGAAGGACTAGAGGGAACTGGAAGGTTTGACATTGTGTCTAAAGACATTGGTGTCCCATTGGTGGCCTTCACTTTGAAGGACCACAGCCACTTCAATGAGTTCCAAATCTCTGACCTGCTGAGGCGCTATGGATGGATAGTGCCAGCATACACTATGCCACCAGATGCAGAACATGTCACAGTCCTTCGGGTTGTGGTTAGGGAGGACTTTTCTCGCACCCTTGCGGAGCGTCTTGTCACTGATATCACTAAAGTGGTGCACGAGCTGGAGCAGCTTCCTGCTAGGGTAATCAGCAGCGTAACGTCTACTGGAGAAGAAGGTGAAGACACTGAGGGCAAAGTATTGCTTGCCAAGAAGAGTGAACTAGAGACACAGAGGGAAATCACATCAGTTTGGAAGAAGTTTGTTATGGACAAGAAGAAGATGAATGGTGTTTGTTAG 1602 0.465 MGEERTRNACRLVWGYFQRTSLSFYLSRLSSAMVLSKTASQTDVSVHSTFASRYVRTALPRFKMGELSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEIAVGVGTVGSSEAIMLAGLAFKRRWQNRRKEQGKSCDSPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYFVMDPEKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVQKNQETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYKMVMENCRDNMQVLKEGLEGTGRFDIVSKDIGVPLVAFTLKDHSHFNEFQISDLLRRYGWIVPAYTMPPDAEHVTVLRVVVREDFSRTLAERLVTDITKVVHELEQLPARVISSVTSTGEEGEDTEGKVLLAKKSELETQREITSVWKKFVMDKKKMNGVC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00540 533 PANTHER GLUTAMATE DECARBOXYLASE 33 533 IPR010107 GO:0004351|GO:0006536|GO:0030170
Phco3g00540 533 Gene3D - 33 97 - -
Phco3g00540 533 Gene3D - 393 480 - -
Phco3g00540 533 FunFam Glutamate decarboxylase 393 480 - -
Phco3g00540 533 Gene3D - 98 391 IPR015421 GO:0003824
Phco3g00540 533 FunFam Glutamate decarboxylase 98 392 - -
Phco3g00540 533 FunFam Glutamate decarboxylase 33 97 - -
Phco3g00540 533 Pfam Pyridoxal-dependent decarboxylase conserved domain 71 413 IPR002129 GO:0016830|GO:0019752|GO:0030170
Phco3g00540 533 NCBIfam glutamate decarboxylase 48 477 IPR010107 GO:0004351|GO:0006536|GO:0030170
Phco3g00540 533 SUPERFAMILY PLP-dependent transferases 47 477 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00540 Phco-Chr3 4206923 4212873 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00540 3 4206923 4212873 Phco3g00540 3 4206923 4212873 ECH
Phco11g01518 11 11542725 11549231 Phco3g00540 3 4206923 4212873 PCT