Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02636 ATGAAAGAAGAAACCGCGTATCTGAAGGAGAGGAGAAAGCCTTTGCGGGCCCCACCTCACTGCAATCAACGAACAAGACAGTGGTGTGTGAAAGCTGTGTGTTGGAATCCGAGGTTCCAAACCCTCAACTCAATCAAACAAACTCAGCAACTAACTTTAATGGCAACTGGAGACTTCATTAATAAATCCCTTTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCGATTGAGGCACTGAATGAAGGGAATGGCTCCAATAAAACATCAATTTCCAAGTACATAGAATCTAGCTACGGTGTATTGCCTCCGGGCCACAAGGTACTGCTCAATGTGCACCTTGCAAAAATGAGGGACACTGGGCTGCTAGACTTTTGGAAGAATAACTACACCAAGCGTAACCCAAACGCCCCGCCGCGGCGTGGCCGTGGCAGGCCGCCCAAGCCCAGGGAGTTTCTGGCTCCGGGCACTTTCTTGTCACCGCCCAGGCCCAGGGGTCGTCCCCCAAAAGGCCCAAGGGACACGCCAAGGCCATCCAAAGCCTCGGCTGGGAGTGGCAGACCCAGAGGCCGGCCTAGGAAGATGGCCCGGCCCGCTGGAGGGTTTAGCGAAGCATCGCCTTCCCCGTTGAAGCCCAGCGGGAAGCCCAGGGGAAGGCCTCCGAAAGTGAAGCCCGAATTGATAGAAAATATTGCTTAG 699 0.5393 MKEETAYLKERRKPLRAPPHCNQRTRQWCVKAVCWNPRFQTLNSIKQTQQLTLMATGDFINKSLSLPPYPEMILEAIEALNEGNGSNKTSISKYIESSYGVLPPGHKVLLNVHLAKMRDTGLLDFWKNNYTKRNPNAPPRRGRGRPPKPREFLAPGTFLSPPRPRGRPPKGPRDTPRPSKASAGSGRPRGRPRKMARPAGGFSEASPSPLKPSGKPRGRPPKVKPELIENIA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02636 232 Gene3D - 61 137 IPR036388 -
Phco2g02636 232 PRINTS AT-hook-like domain signature 140 150 IPR017956 GO:0003677
Phco2g02636 232 PRINTS AT-hook-like domain signature 160 171 IPR017956 GO:0003677
Phco2g02636 232 PRINTS AT-hook-like domain signature 184 194 IPR017956 GO:0003677
Phco2g02636 232 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Phco2g02636 232 SMART AT_hook_2 214 226 IPR017956 GO:0003677
Phco2g02636 232 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Phco2g02636 232 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Phco2g02636 232 SMART h15plus2 63 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco2g02636 232 Pfam linker histone H1 and H5 family 67 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco2g02636 232 PANTHER HISTONE H1 36 225 - -
Phco2g02636 232 SUPERFAMILY "Winged helix" DNA-binding domain 62 147 IPR036390 -
Phco2g02636 232 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 65 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco2g02636 232 FunFam HMG-Y-related protein A 61 143 - -
Phco2g02636 232 PRINTS High mobility group protein (HMGY) signature 160 172 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco2g02636 232 PRINTS High mobility group protein (HMGY) signature 203 222 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco2g02636 232 PRINTS High mobility group protein (HMGY) signature 188 199 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phco2g02636 232 MobiDBLite consensus disorder prediction 128 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02636 Phco-Chr2 56089056 56090120 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02636 2 56089056 56090120 Phco2g02636 2 56089056 56090120 ECH
Phco2g02636 2 56089056 56090120 Phco3g00579 3 4699499 4700360 PCT
Phco3g00586 3 4767835 4768708 Phco2g02636 2 56089056 56090120 PCT