Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01533 ATGGGTGAACGATGTCATTCAGATGCTCAGTTAGATACTATTTCCAGTGGGAGTGAGGAACACTTGATCTCTCCGTTACCAAAAGAATGTAAGACTGGATCCATTACTTTGGATGAAAATGATGATGTTTATCCTGTGCCACGGCCTGGAATGATCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAGATATGCTAACCAAATGGGCTTCAACGTCAAGACTAGAACCTCAAAAAGGGGACGTGAAGGCAAAGTTAAATATTTGATACTGGTATGTTCTGAGAGAACTAAAACTGCTATTGATGCATCAAGGAAACAGTATTGTACTGCTAGGATAAATTTGACTTTACATAAAGATGGAACCTATCGAGTTAGTGCAGTTACTCTCGGTCACAATCATGAATTGGGTACTCGTAGTGCATTCCCAATTAATATTGAGATGAAATGTAAAAGGAAAATGGATCCAGAAGTCATTGACATGGGTGTTAACAAGATATCAGAGCAAAATCAGAAAGAAAGACATGGGATTGGAGAAAATGGAGATGGTGATGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAGGATAGAAACTTCTTCTATGCAATTGACTTGGATGATTTGTTCAGTGTGAAGAATGTTTTTTGGTCCGATGGAAGGAGTAGAGCTGCATATGAGTCGTTTGGTGATGTGGTGACAGTTGATACTTCATGCCTTTCTAATCACTACAAAGTGCCACTTGTAACTTTCGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGTTGTTATCATCTGAAGACTCAGAGTCATTTGCTTGGTTGTTCGAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACCAGGAATTGTAACAGATCATTGCTGCAGGGCTATGCAGAAAGCTGTTGAAAAAGTATACCCGTCCATTCGACATCGGTGGTGTTTGTCAAATATAATGGGAAAACTTCCCCAACTAATCCATGAGTATGCTAATTGCAAGACCTTAAGAGATCGTGTGCAGAATGTTGTGTATGACACACCAACAACAGATGAATTTGAGGGGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAAGACAATAAATGGTTGAAGGAATTGTTCCTTGAGCGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATATTAATCCACAAAGTGGAAGTAGGCAGGCATGTTTTGACGGATATATAAACCGACAAACAACTCTGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAATATAAGGCTGAGAAGGAGTATATAGCTGACATACATTCATCCAGTAACAGCCAGACTTGTGTTACCAAATCTTCAATTGAGAGGCAGTTTCAATCTGCTTATACTCACGCCAAGTTTGTGGAGGTTCAACGTGAATTTGTTGGAAAAGCTGATTGTAACGTTTTTGTCGCTTTTGAAGATGGTTCTATTTGTCACTACAATGTGATAGAGGATATGATAACAGAGGATAAGCCTAAGGAATCCTTGGTTGAAGTCATATATAACAGGGAAGATTGTGATCTAAAATGCAGTTGTCGTTTCTTTGAGTTCAGAGGTTTACTTTGTAGGCACTCGCTTGCAGTACTGTCACAAGAGAGAGTAAAGGAGGTCCCCTGTAAATATATTTTGGACAGATGGAGGAAAAATATTCAGAGGAAGCATGTTTATGTCAAAACCAGCTATGGTGTTGAACATTTTGGACCTCAAGTGCAGAGGTTTGATCAGTTATGCAATCAATTCAATAGTATTGCTGCTGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGAACCATGGACATCGTTACTGAGAAACTCTTCTCATGTGGATGTACAGAAACACAGCAATATGATAAATTTAACATGA 1968 0.3963 MGERCHSDAQLDTISSGSEEHLISPLPKECKTGSITLDENDDVYPVPRPGMIFRSEAEARLYYTRYANQMGFNVKTRTSKRGREGKVKYLILVCSERTKTAIDASRKQYCTARINLTLHKDGTYRVSAVTLGHNHELGTRSAFPINIEMKCKRKMDPEVIDMGVNKISEQNQKERHGIGENGDGDALQKYLVRMQEQDRNFFYAIDLDDLFSVKNVFWSDGRSRAAYESFGDVVTVDTSCLSNHYKVPLVTFVGVNHHGQSVLFGCGLLSSEDSESFAWLFESLLHCMSGVPPPGIVTDHCCRAMQKAVEKVYPSIRHRWCLSNIMGKLPQLIHEYANCKTLRDRVQNVVYDTPTTDEFEGKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGGFWAGMYINPQSGSRQACFDGYINRQTTLKQFVDQYNNALQYKAEKEYIADIHSSSNSQTCVTKSSIERQFQSAYTHAKFVEVQREFVGKADCNVFVAFEDGSICHYNVIEDMITEDKPKESLVEVIYNREDCDLKCSCRFFEFRGLLCRHSLAVLSQERVKEVPCKYILDRWRKNIQRKHVYVKTSYGVEHFGPQVQRFDQLCNQFNSIAAAAAEFEGTSSFVKDTLCNLKEKLEPWTSLLRNSSHVDVQKHSNMINLT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01533 655 Pfam SWIM zinc finger 529 552 IPR007527 GO:0008270
Phco2g01533 655 SMART 26again6 530 557 IPR006564 GO:0008270
Phco2g01533 655 Pfam MULE transposase domain 233 326 IPR018289 -
Phco2g01533 655 Pfam FAR1 DNA-binding domain 62 137 IPR004330 -
Phco2g01533 655 ProSiteProfiles Zinc finger SWIM-type profile. 517 555 IPR007527 GO:0008270
Phco2g01533 655 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 632 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01533 Phco-Chr2 45340062 45342029 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco2g01533 MULE 1.2e-23 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01533 2 45340062 45342029 Phco2g01533 2 45340062 45342029 ECH