Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00322 ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGGGGAATGTTTGCCAGTGAGGATCATGAGCATGATTTCACATCGGAGTTTCCTCTTCTGCTTGGTGGAGGCGATGAACTGAACATTGTGACACACCAAGCCAATTTTTGTGCTGCTCCTGAAGCTGGTGAAAATGAGCTGATGTTTTATTCTTTAGATGCTCACAACTCAAATTCTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTAGTTACCCTGATCATATGTCAGCAAATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCGCTTGCTAACATTGCAACGGAAGAGAGTGTGAAGCTGTATGAAGATTTGGCAAGTGACAGATTGGAGAATTCTGAGTGCAATCAAATGGAACCTATTGTTTTTCCCACCAAGAGGAAGATTGATGTGACTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAACCTCGTGTTTCAAAAGATGTGCAAGGATGTATGAAGAACAAATGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGACTAATGCAGGATCAGATGGACAAAGCTCAAGTAGTAACATGTCAGAGGATGATAACAAGGAAAATATTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTTAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCCAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAGCTACAAATCAAGCTTTTAAGCTCAGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGACTCAATCTGAACATGAAGTCCCTACCACTCTGA 1068 0.4017 MEPVGAFPDGEWDCFRGMFASEDHEHDFTSEFPLLLGGGDELNIVTHQANFCAAPEAGENELMFYSLDAHNSNSSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFSYPDHMSANNACVYSLDEKHFAPFAPSLANIATEESVKLYEDLASDRLENSECNQMEPIVFPTKRKIDVTAEGKINNRSENHKKKPRVSKDVQGCMKNKWSKKNQKHDSNREDAEETNAGSDGQSSSSNMSEDDNKENIGGATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNMKSLPL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00322 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 342 - -
Phco2g00322 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Phco2g00322 355 MobiDBLite consensus disorder prediction 179 282 - -
Phco2g00322 355 MobiDBLite consensus disorder prediction 227 274 - -
Phco2g00322 355 SMART finulus 276 325 IPR011598 GO:0046983
Phco2g00322 355 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Phco2g00322 355 FunFam Basic helix-loop-helix transcription factor 271 328 - -
Phco2g00322 355 CDD bHLH_AtIND_like 271 333 - -
Phco2g00322 355 MobiDBLite consensus disorder prediction 209 226 - -
Phco2g00322 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
Phco2g00322 355 Gene3D - 269 327 IPR036638 GO:0046983
Phco2g00322 355 MobiDBLite consensus disorder prediction 179 200 - -
Phco2g00322 355 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00322 Phco-Chr2 2635635 2637487 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g00322 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00322 2 2635635 2637487 Phco2g00322 2 2635635 2637487 ECH