Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00321 ATGGCTTTGGAAGCTCTCAACTCACCCACAGCAACTGCTCCATCCTTCCCTTTTGACCACCCAACCATTCCATGGGCAAAACGCAAGCGTTCCAAGCGTTCCCGGGACCACCCTTCTGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGTGGCACCACCGCCCTCACCAACCCTCACATCACCGCTCCGCCGCCACACCCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTTTGCGACAAAACCTTCCCCTCCTACCAAGCTCTCGGGGGACACAAGGCCAGCCACCGGAAACTCGCTCTCGCCGACGACCACCCCACCTCCTCCGCCGTCACTTCTACCAGCATCGCCACCGCCGCCGGAGGCCCCAGGGCCCACGAGTGCTCTATCTGTCACAAGTCCTTCCCCACAGGACAGGCCCTCGGTGGACACAAACGTTGTCACTACGAAGGCAATAATAATACTAATAACGGAAACAGTACGAGTGTTGTGACCGCCTCGGAAGGTGTTGGGTCCACTCACACCATGAGTCACAGCCACCACCGTGATTTTGATCTCAATATTCCGGCTTTTCCCGAGTTAACAACCAAGCCAGGAGATGACGAGGTTGAGAGCCCTCACTCTGTGATGAAGAAACCGCGTCTCTTCGTCATTCCCAAGATCGAAATTCCTCATTTTCACTCAACTCTTTGA 711 0.5584 MALEALNSPTATAPSFPFDHPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGTTALTNPHITAPPPHPTPDPSSKLTYKCSVCDKTFPSYQALGGHKASHRKLALADDHPTSSAVTSTSIATAAGGPRAHECSICHKSFPTGQALGGHKRCHYEGNNNTNNGNSTSVVTASEGVGSTHTMSHSHHRDFDLNIPAFPELTTKPGDDEVESPHSVMKKPRLFVIPKIEIPHFHSTL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00321 236 MobiDBLite consensus disorder prediction 1 37 - -
Phco2g00321 236 SUPERFAMILY beta-beta-alpha zinc fingers 79 154 IPR036236 -
Phco2g00321 236 Gene3D Classic Zinc Finger 78 154 - -
Phco2g00321 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Phco2g00321 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 196 IPR044653 GO:0003700
Phco2g00321 236 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Phco2g00321 236 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Phco2g00321 236 SMART c2h2final6 80 102 IPR013087 -
Phco2g00321 236 SMART c2h2final6 132 154 IPR013087 -
Phco2g00321 236 Pfam C2H2-type zinc finger 80 104 - -
Phco2g00321 236 Pfam C2H2-type zinc finger 131 155 - -
Phco2g00321 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00321 Phco-Chr2 2629060 2629770 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g00321 zf-C2H2_6 9.1e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00321 2 2629060 2629770 Phco7g00515 7 3762662 3766318 PCT