Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00315 ATGGACCCGTCTATAATGAAGCTTCTAGAAGATGACGAGGATGAAACAATGCATTCAGGGGTGGATGTGGAGGCCTTCCAGGCTGCTCTAAATAGAGATATAGGAGGAGACTTGTCTGCTTCTCTTCCTGGTTCAGATGCAGTGTTGTCTCAAGGAAGCAATAATACATCAAGTCAATCTTTATCACAGTGGCCTACTTCTAACCCTGACAGCCAAACTGATGGTCAAAATCAAGAACCTAAAACTGCACAACAAGAGCAACATTCTTCTGAGATGGAGCCGAAGCAACATGGGTCGCATGGCGAGCATCTTCAGCATGTTGCTTCTCAAGATGTAAATAATCCTCATCTATCACAGAAACAATCTCAAGATGACTGTCACCAAGCACAAGCACCTGCTGTACAAGTTCCCCTCCACAATTCTCAAACTATTGGAATTCAGAATTCTGGAAAGGATTCAGTCCTTAATAACGAAGTAGTAAAGAGTCATAATCCCAGCAGTGAATCTCAGTATGCAAAGTTGCAGCAGATGAGTAATCAACAGGCTACAGTCTCTGAGCAGCCAAGTAGCCAAGTAAATCGTAGTAAACAAGTACCATTTGGCCTGTTGCTACCCATCTTGCTTCCTCAACTTGCCAAAGACAGAGCCATGCAACTTCAAACCTTATTTGCTAAATTGAAGAAAGATGAAATACCGAAAGACAGTTTTGTGCGGCTTATGAAAGGTATCGTAGGGGACCAGATGCTTAGATTAGCATTAGCAAAGGTGCAAATGCAACCACAGGCAAGGTCCAATCAAGCATCTGCTGGGCAGCAGCTTCCTGTTAGGATGCCAACTGTTAGTTCAGGCGCAAGGCAATTGAATGATCCCCATGCTTTAGCACAGATGCATCAAAGAAGTATGAATGTTGCCGTTGACCAATCTCGCATGAGTTCTTCAGCTGGCCAAACTATGGATAACAATGCAAGAAAATCTCAGGAATTCGATGTTAAAATAGAATCTCAAGGATTGCAACCAAAACAGTTGACGTCTTCCAGTTCCAACACAGTAGGTCAAGAAACAGAAAGAACATCAGTTCACATACAAGGGCTCAATAAGCAGCAGCAACACCATCTACATTTTGCACCAGCATATGGAAACAGTGGTGGTAACTATAACCCTTATTCTGGGGCAACAAGTAGTTCCTCTTTGTCTATCAAACTGCAATCACATGATTCACACATGAGTCAAATTCCTCATCAAAGTATTGGTTCAAATCACTTAGGTGGGTCAACACATGGTTTGAGTGTAACTGGTATGCCAAAAGTTGAACAGCAGAATTCTTTCAATGATCCCAAGAGACTGCCAGGTGGATCTGTGTCTTCTGCTGTAAACAATACAGCATCTCAACAAACTTCAACTGCTTGGCAATCATCAACAAACAAAGAACAAAATCTGGGCTTAATGTCATCTGTTTCTTATGTGAAGAAGGAACCTAGTGACTTATCTACTGAGCAGCAAAATAGGCACAATTTTTCAAAATTGCATGGGTATTCTTCTGTTAATTCCGCTCAGCTTGAACAGAGTGGTGCCAGTCAAGGAACTCTAAAAGATGAGTTTTCAAGAGGTCTTCCAGCATCCACAAGCATGCCACCTACAACATCTACTGGCTTGCTACCACACAGTTCTGCTTCCTCTTCTATAATGACCCACCTAGACTCTAGTGTCCCGGTTCCATCAAATGCTTCTGGAATTGTTGCTAGGACATCTTTTAAAAAGTCTGCCGTTACCCAAAAGAAACCACTTGAAGCACTTGGTTCCTCACCTCCTCCTTCTAGTAAAAAACAAAAAACATCTGGGGGATATGTTGAACAAAGCATTGAACAACTTAATGATGTCACTGCTGTTAGTGGAGTTGACCTCAGGGAAGAGGAAGAGCAGTTATTTTCAGGGCCCAAAGAGGATAGTCGAGTGTCAGAAGCATCTCGAAAGGCTGTGCAAGAAGAAGAGGAAAGACTGATCTTGCAGAAAGCTCCATTGCAAAAAAAATTAATTGACATCATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAAATGTTTGTCACTGAGTGTGGAGGAAAGGATGCGTGGACTGATAAGTAACCTGATTAGAATATCAAAGCAGAGGGTTGATTTTGAGAAAACGAGACATCGGACTGTTGTCACTTCGGATGTTCGGCAGCAAATCATGACAATAAATAGGAAAGTAAGGGAAGAGTGGGAGAAAAAACAGGCAGAAGCAGAGAAGCTTCGGAAACTAAATGATGTTGATGGCAATACTGGAGTTGATGGTGAGAAGGATAAGGACGACCGTGGTAAATCAACAAAGGTGAACAAGGAAGAGGATGACAAGATGAGGACAAATGCTGCCAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAAGCAGAAACGTGAAGGGGTGGACCCGTCGTCTGGTTCTCAACCACCTAAAGATGTGAACCGCAAATCTTCATCAACATCTGAAAGAAGTACAAAGGATAACCAAGAAGGGGAGAAAAGAGGTTCAACCCCTTTTATAGCAAGTTCAGTGGCAAGAAAACTTGGAAAGAATCATGCCATGGCCCCTCACACTAGTGTAGCTCGAAGCATCTCTGTCAAGGATGTGATTGCAGTCCTGGAGAGGGAGCCCCAGATGTCTAAATCCCCACTCATACATCGCTTGTACGAGAAAATTCATTCTGAGGCCCCAGTTGAACAAGGTTAA 2796 0.4317 MDPSIMKLLEDDEDETMHSGVDVEAFQAALNRDIGGDLSASLPGSDAVLSQGSNNTSSQSLSQWPTSNPDSQTDGQNQEPKTAQQEQHSSEMEPKQHGSHGEHLQHVASQDVNNPHLSQKQSQDDCHQAQAPAVQVPLHNSQTIGIQNSGKDSVLNNEVVKSHNPSSESQYAKLQQMSNQQATVSEQPSSQVNRSKQVPFGLLLPILLPQLAKDRAMQLQTLFAKLKKDEIPKDSFVRLMKGIVGDQMLRLALAKVQMQPQARSNQASAGQQLPVRMPTVSSGARQLNDPHALAQMHQRSMNVAVDQSRMSSSAGQTMDNNARKSQEFDVKIESQGLQPKQLTSSSSNTVGQETERTSVHIQGLNKQQQHHLHFAPAYGNSGGNYNPYSGATSSSSLSIKLQSHDSHMSQIPHQSIGSNHLGGSTHGLSVTGMPKVEQQNSFNDPKRLPGGSVSSAVNNTASQQTSTAWQSSTNKEQNLGLMSSVSYVKKEPSDLSTEQQNRHNFSKLHGYSSVNSAQLEQSGASQGTLKDEFSRGLPASTSMPPTTSTGLLPHSSASSSIMTHLDSSVPVPSNASGIVARTSFKKSAVTQKKPLEALGSSPPPSSKKQKTSGGYVEQSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVEKCLSLSVEERMRGLISNLIRISKQRVDFEKTRHRTVVTSDVRQQIMTINRKVREEWEKKQAEAEKLRKLNDVDGNTGVDGEKDKDDRGKSTKVNKEEDDKMRTNAANVAARAAYGGDDMLSKWQLMAEQAKQKREGVDPSSGSQPPKDVNRKSSSTSERSTKDNQEGEKRGSTPFIASSVARKLGKNHAMAPHTSVARSISVKDVIAVLEREPQMSKSPLIHRLYEKIHSEAPVEQG 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00315 931 CDD TAF4 618 917 IPR007900 GO:0005669|GO:0006352
Phco2g00315 931 MobiDBLite consensus disorder prediction 35 104 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 1 20 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 846 863 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 385 476 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 637 657 - -
Phco2g00315 931 ProSiteProfiles RST domain profile. 191 262 IPR022003 -
Phco2g00315 931 MobiDBLite consensus disorder prediction 593 616 - -
Phco2g00315 931 Pfam RCD1-SRO-TAF4 (RST) plant domain 194 257 IPR022003 -
Phco2g00315 931 Gene3D Histone, subunit A 668 713 IPR009072 GO:0046982
Phco2g00315 931 MobiDBLite consensus disorder prediction 86 104 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 822 887 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 539 559 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 336 356 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 830 845 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 305 323 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 44 85 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 305 356 - -
Phco2g00315 931 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 6 923 IPR045144 GO:0005669|GO:0006352
Phco2g00315 931 MobiDBLite consensus disorder prediction 761 798 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 518 559 - -
Phco2g00315 931 MobiDBLite consensus disorder prediction 602 616 - -
Phco2g00315 931 Coils Coil 743 763 - -
Phco2g00315 931 FunFam Transcription initiation factor TFIID subunit 4B 666 713 - -
Phco2g00315 931 Pfam Transcription initiation factor TFIID component TAF4 family 623 917 IPR007900 GO:0005669|GO:0006352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00315 2 2572046 2580854 Phco2g00315 2 2572046 2580854 ECH