Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00301 ATGGCATCGGGAAGCAGGGATATGGATCGGGTCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTGGTGCAGGCCCTTGGGCCCAGGAACTGGACGGTGATAAGCAAGTCTATTCCGGGTCGATCCGGCAAATCGTGCCGGCTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGCCCTTTCTCGCCGGAAGAGGACGATGCTATTGTCAGGGCACACGGTAGGTTCGGTAACAAGTGGGCCACCATAGCACGTTTACTCAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCGTTAGTCTCGATGTAACCGATCGTCCACCGCTTAAAAGATCCGCCAGCGTCGGCGCGGGTTATTTAAACCCAAGCAGCCCATCCGGGTCTGAGTTAAGCGATCCGGGCCAGCCCGCTCTGTCGACTCCTTCTGCCTCGGCCCGTTGCAGGCCCAATCTCATGGAAACCGCTTCTTCACTCTCCGATCCAGCTACGTCACTGAGTTTGTGTCTCCCTGGGTTCGGCTCCGAGCCTAACCTTGTTGCTGCACCGCGGCCAACATCGCCGCCGCCAGTATCTCCGCCGCCGCCTCCAGCGGCACCAACGGTTGAGGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTTTTGAGGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAGCTGAAGAATGGATTGAGAATACAAACCGAAGCCATTGGAAACGCAGTGGTGAAGCGCATGGGAATCAGCAACATCGAGTGA 831 0.58 MASGSRDMDRVKGPWSPEEDEALQRLVQALGPRNWTVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDDAIVRAHGRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSLDVTDRPPLKRSASVGAGYLNPSSPSGSELSDPGQPALSTPSASARCRPNLMETASSLSDPATSLSLCLPGFGSEPNLVAAPRPTSPPPVSPPPPPAAPTVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMELKNGLRIQTEAIGNAVVKRMGISNIE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00301 276 Gene3D - 11 63 - -
Phco2g00301 276 FunFam Transcription factor MYB44 66 112 - -
Phco2g00301 276 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Phco2g00301 276 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Phco2g00301 276 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Phco2g00301 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Phco2g00301 276 MobiDBLite consensus disorder prediction 195 217 - -
Phco2g00301 276 MobiDBLite consensus disorder prediction 198 217 - -
Phco2g00301 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Phco2g00301 276 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Phco2g00301 276 PANTHER MYB PROTEIN-RELATED 12 163 - -
Phco2g00301 276 CDD SANT 14 56 IPR001005 -
Phco2g00301 276 MobiDBLite consensus disorder prediction 124 164 - -
Phco2g00301 276 Gene3D - 65 123 - -
Phco2g00301 276 MobiDBLite consensus disorder prediction 134 164 - -
Phco2g00301 276 CDD SANT 66 109 IPR001005 -
Phco2g00301 276 FunFam MYB transcription factor 12 63 - -
Phco2g00301 276 SMART sant 63 111 IPR001005 -
Phco2g00301 276 SMART sant 11 60 IPR001005 -
Phco2g00301 276 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00301 Phco-Chr2 2458475 2459305 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00301 Myb_DNA-binding 5.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00301 2 2458475 2459305 Phco4g01154 4 9499515 9500698 ECH
Phco2g00301 2 2458475 2459305 Phco8g01010 8 10515293 10516159 ECH
Phco2g00301 2 2458475 2459305 Phco2g00301 2 2458475 2459305 ECH
Phco2g00301 2 2458475 2459305 Phco7g00489 7 3583009 3584149 PCT