Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00298 ATGTCTCATCATTACCCAAAACTCCTTCTAGACACCCTACACTGCTTAGAAGACCACTTCCATTGGGAGGAAGGAAAACAAAGAGAAGAAGATGATGATTACATTAGCACCACACCAAAACCAAACTTATCCGATGTGGTCCTTTTCGAACAAGACCACTTCTGGGACACCCACGAGCTATGTTCTCTTCTCGCCAAAGAAAACCTTAACAACCTTTCCATCTCTCTCCTAAACAACCCTTCTTTGGCTTCTTCTCGCGGAGAAGCTGTGGAGTGGATTCTCAAAGTGAATCTTCATTATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTTCACCTTCAGATTCCAGAACGACAAACCATGGCTCACGCAACTCGTTGCAGTCGCCTGTCTCTCTCTTGCAGCTAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGGCAGTAAACACCTGTTCGAAGCGAAGACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACGCTTGGATGGAAGATGAACCCAGTAACACCTCTCTCGTTTCTTGATTACATCACCAGAAAGCTTGGCTTAAAGGGTCATCTGGGCTTGGAGTTTCTCAGAAGGTGTGAGACCGTTCTTCTCTCTGTCTTTGCAGACTCAAGATTTATGAGTTATCTTCCTTCTGTGTTGGCAACGGCTACGATGATGCGCGTGGTGAGTGTTGTGGAGCCTGGTTTGGGTGAGGAATACCAAGATCAGGTCTTGGGTATTCTCGGAATCGAGAAGGAAAAGGTGAAAGAATGCTACAAGGTAATAATGGAGGTTGTGACAGGGAAGAACGAAGAAGGTAAACGAGGGAATTTGAAGAAACGGAAGTTTGAGTGCATTCAGTGTAGTCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCATTGAAGAAAAGTAGGAGCCAAGATCAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1041 0.4582 MSHHYPKLLLDTLHCLEDHFHWEEGKQREEDDDYISTTPKPNLSDVVLFEQDHFWDTHELCSLLAKENLNNLSISLLNNPSLASSRGEAVEWILKVNLHYSFSTLTALLAVNYLDRFLFTFRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGGSKHLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLGLEFLRRCETVLLSVFADSRFMSYLPSVLATATMMRVVSVVEPGLGEEYQDQVLGILGIEKEKVKECYKVIMEVVTGKNEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSLKKSRSQDQLLLKHSNSDFLTIPR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00298 346 SMART cyclin_7 91 179 IPR013763 -
Phco2g00298 346 Gene3D - 187 276 - -
Phco2g00298 346 FunFam CYCLIN D32 187 276 - -
Phco2g00298 346 PANTHER CYCLINS 80 285 IPR039361 -
Phco2g00298 346 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Phco2g00298 346 CDD CYCLIN_AtCycD-like_rpt2 188 278 - -
Phco2g00298 346 FunFam D6-type cyclin 70 186 - -
Phco2g00298 346 Gene3D - 81 186 - -
Phco2g00298 346 Pfam Cyclin, C-terminal domain 188 289 IPR004367 -
Phco2g00298 346 SUPERFAMILY Cyclin-like 62 186 IPR036915 -
Phco2g00298 346 SMART Cyclin_C_2 188 308 IPR004367 -
Phco2g00298 346 CDD CYCLIN_AtCycD-like_rpt1 86 183 - -
Phco2g00298 346 SUPERFAMILY Cyclin-like 189 285 IPR036915 -
Phco2g00298 346 Pfam Cyclin, N-terminal domain 83 186 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00298 Phco-Chr2 2409610 2411136 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00298 2 2409610 2411136 Phco4g01149 4 9456315 9457620 ECH
Phco2g00298 2 2409610 2411136 Phco8g01014 8 10578986 10580446 ECH
Phco2g00298 2 2409610 2411136 Phco6g02826 6 49494196 49495884 ECH
Phco2g00298 2 2409610 2411136 Phco2g00298 2 2409610 2411136 ECH
Phco2g00298 2 2409610 2411136 Phco7g00486 7 3549156 3550764 PCT