Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00293 ATGAGTGTGGGCGTTGGTGTTGTGCGCGTGGGACAAGTGACCCAATTCTCTGCCCGTATTGTTTCAATTGGGTATCCCCATGTATCTACCTCCATATATTTTCAATACTCCCATAACCAAACATTTTCTCCACGTCAAGTTCACTGCACATTTTCTCCACTCTCAACACCTTCTTTCTCTTCTTCAACAAACATGGTTTCTTCTACTTCCGCTACCATGGCGATTATGCTGTTGTTCGCGCTCTTTGCGCTTTCTTCAGCCTTGGATATGTCCATTATCTCCTACGACAACGCCCACCAGGACAAGGCCACGTGGCGGACCGACGAGGAGGTCAATTCCTTGTACGAGGAGTGGCTCGTCAAGCACGGCAAATTATACAACGCGCTCGGAGAGAAGGATAAGAGGTTTCAGATCTTCAAAGACAACCTGCGATTCATCGACCAGCAAAACGCCGAGAACCGAACCTACAAGTTGGGACTGAACCGGTTTGCGGATCTGACCAACGAGGAGTACAGAGCCAGGTACTTGGGAACTAAGATCGACCCGAAGCGGAGGTTGGGAAGGACCCCGAGCAACCGTTACGCGCCACGTGTTGGGGAAACACTACCGGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTTGTCCCAGTCAAAGACCAAGCAAGTTGCGGGAGCTGTTGGGCATTCTCGGCAATTGGTGCAGTGGAAGGAATTAATAAGATAGTGACTGGCGATCTGATTTCATTATCAGAACAAGAATTGGTGGATTGCGATACAGGATATAACATGGGATGCAATGGAGGTCTTATGGACTATGCATTTGAGTTCATCATCAAAAATGGAGGCATTGATTCCGAGGAGGATTATCCTTACAAGGGTGTTGATGGTTTATGTGATGAGTATCGGAAAAATGCTAAAGTTGTTGCTATTGATGGTTACGAAGATGTTAATGCCTATGATGAGTTAGCACTGAAAAAGGCTGTTGCAAATCAGCCTGTGAGCGTAGCTGTTGAAGGAGGAGGCAGGGAATTTCAATTATATTCATCTGGTGTCTTCACTGGAAGATGTGGAACAGCGCTAGATCATGGTGTTGTCGCTGTTGGATATGGTACAGACAATGGTCATGATTATTGGATTGTGAGGAATTCATGGGGTGCTGACTGGGGAGAGGAAGGGTACATCAGATTGGAAAGAAATCTGGGTAACAGCAGATCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCCATTAAGACTGGTCAAAACCCACCCAATCCTGGACCATCACCCCCTTCACCCGTGAAGCCACCAAATATTTGTGACAATTACTACAGCTGTTCAGATACTGCCACTTGCTGCTGCATTTTTGAGTTTGGAAACGACTGTTTTGAGTGGGGTTGCTGTCCTCTTGAAGGTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCCCATGACTATCCCATCTGCAACACTTATGCTGGAACTTGTCTCAGGAGCAAGAACAACCCATTTGGAGTGAAGGCATTGAGGCGTACTCCAGCCAAACCCCATGGGGCCTTTGCAGGCAACAAGAAGGTCAGCAATGCTTAA 1596 0.4743 MSVGVGVVRVGQVTQFSARIVSIGYPHVSTSIYFQYSHNQTFSPRQVHCTFSPLSTPSFSSSTNMVSSTSATMAIMLLFALFALSSALDMSIISYDNAHQDKATWRTDEEVNSLYEEWLVKHGKLYNALGEKDKRFQIFKDNLRFIDQQNAENRTYKLGLNRFADLTNEEYRARYLGTKIDPKRRLGRTPSNRYAPRVGETLPDSVDWRKEGAVVPVKDQASCGSCWAFSAIGAVEGINKIVTGDLISLSEQELVDCDTGYNMGCNGGLMDYAFEFIIKNGGIDSEEDYPYKGVDGLCDEYRKNAKVVAIDGYEDVNAYDELALKKAVANQPVSVAVEGGGREFQLYSSGVFTGRCGTALDHGVVAVGYGTDNGHDYWIVRNSWGADWGEEGYIRLERNLGNSRSGKCGIAIEPSYPIKTGQNPPNPGPSPPSPVKPPNICDNYYSCSDTATCCCIFEFGNDCFEWGCCPLEGATCCDDHYSCCPHDYPICNTYAGTCLRSKNNPFGVKALRRTPAKPHGAFAGNKKVSNA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00293 531 SMART GRAN_2 441 498 IPR000118 -
Phco2g00293 531 PRINTS Papain cysteine protease (C1) family signature 220 235 IPR000668 GO:0006508|GO:0008234
Phco2g00293 531 PRINTS Papain cysteine protease (C1) family signature 362 372 IPR000668 GO:0006508|GO:0008234
Phco2g00293 531 PRINTS Papain cysteine protease (C1) family signature 377 383 IPR000668 GO:0006508|GO:0008234
Phco2g00293 531 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 360 370 IPR025660 -
Phco2g00293 531 SMART pept_c1 202 418 IPR000668 GO:0006508|GO:0008234
Phco2g00293 531 FunFam Cysteine protease 1 91 420 - -
Phco2g00293 531 FunFam Cysteine protease 1 438 501 - -
Phco2g00293 531 Pfam Cathepsin propeptide inhibitor domain (I29) 115 171 IPR013201 -
Phco2g00293 531 Gene3D Granulin 439 501 IPR037277 -
Phco2g00293 531 CDD Peptidase_C1A 203 417 IPR039417 -
Phco2g00293 531 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 377 396 IPR025661 -
Phco2g00293 531 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 104 412 IPR013128 GO:0008234
Phco2g00293 531 SMART Inhibitor_I29_2 115 171 IPR013201 -
Phco2g00293 531 SUPERFAMILY Granulin repeat 438 472 - -
Phco2g00293 531 Gene3D Cysteine proteinases 94 420 - -
Phco2g00293 531 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 220 231 IPR000169 -
Phco2g00293 531 Pfam Papain family cysteine protease 202 418 IPR000668 GO:0006508|GO:0008234
Phco2g00293 531 SUPERFAMILY Cysteine proteinases 107 418 IPR038765 -
Phco2g00293 531 Pfam Granulin 452 499 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00293 Phco-Chr2 2367727 2371676 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00293 2 2367727 2371676 Phco8g01019 8 10625978 10628637 ECH
Phco2g00293 2 2367727 2371676 Phco9g00472 9 3452525 3454704 ECH
Phco2g00293 2 2367727 2371676 Phco2g00293 2 2367727 2371676 ECH
Phco2g00293 2 2367727 2371676 Phco7g00482 7 3519171 3521770 PCT