LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00278	ATGGTTCTGTGGGCAATTAATTTAGTCATGGAATATAGGGATCACTGTTGTTCCAACGATTCAACGATCACCAACAGAAGAAGAAGAAGAAGCAGAAGCCCAACAACAACCTTGGAGAAATCAAAGAAGCAACACCACGAGAAACCGATGAAGCCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCGAACAAGAGGTCGAGGATTTGGTTGGGTTCTTACACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCCTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGGGCTAACGATGACGATTCCGTGAACATGTCAGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAGACCGCGCTTCACCATCACGCGCCTTCGCACAACCCGACTCCAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGACTGA	543	0.5359	MVLWAINLVMEYRDHCCSNDSTITNRRRRRSRSPTTTLEKSKKQHHEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANDDDSVNMSADSIRRKATQVGARVDALQTALHHHAPSHNPTPISLKPDLNEFPKLEDLQD	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00278	180	SMART	rav1_2	52	115	IPR001471	GO:0003700\|GO:0006355
	Phco2g00278	180	ProSiteProfiles	AP2/ERF domain profile.	52	109	IPR001471	GO:0003700\|GO:0006355
	Phco2g00278	180	Gene3D	AP2/ERF domain	52	110	IPR036955	GO:0003700\|GO:0006355
	Phco2g00278	180	CDD	AP2	53	111	IPR001471	GO:0003700\|GO:0006355
	Phco2g00278	180	PRINTS	Ethylene responsive element binding protein signature	53	64	IPR001471	GO:0003700\|GO:0006355
	Phco2g00278	180	PRINTS	Ethylene responsive element binding protein signature	91	111	IPR001471	GO:0003700\|GO:0006355
	Phco2g00278	180	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED	35	178	-	-
	Phco2g00278	180	MobiDBLite	consensus disorder prediction	20	52	-	-
	Phco2g00278	180	SUPERFAMILY	DNA-binding domain	52	110	IPR016177	GO:0003677
	Phco2g00278	180	MobiDBLite	consensus disorder prediction	20	46	-	-
	Phco2g00278	180	FunFam	Ethylene-responsive transcription factor 2	51	110	-	-
	Phco2g00278	180	Pfam	AP2 domain	53	101	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00278	Phco-Chr2	2242179	2242955	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Phco2g00278		AP2	3.2e-11	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g00278	2	2242179	2242955	Phco2g00278	2	2242179	2242955	ECH