Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00272 ATGGCTGGTGACATGCACCAACCACAACCCTCTCTTGGCAGAACCTTCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCCCACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCACACAACAACACCAACAACCCTGTTCCTTCCTCTCCCTCAACTTTCCATTTCTCTCACCCCATCCCTGCCACTGATGCCAACACCTTCAAACAACACACCAGTAATCACAACCCCGATTTCACTTCTTCTGCTGAGAAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGCAGGATTAACGAAAAAATGAAAGCCTTGCAGAAATTAATTCCAAATTCTAACAAGACAGACAAAGCTTCGATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTTAGCTTGCATCCAATGTCTTTGCCAGGAGAACAAAGACCTATGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAAAGAAGAAAACTTGATTCGGCATGCTTTAAGTTTTCCGAAGCAATGCAGCATCTCAGATCAGTCTGTTGTTCTACCCTCAGTGACAAGATTAGCTACTTCGAATGCCCCATCCACTTTTCATCCTTCTATTAAGGATACACTCTACGACAGCATGCCCCAACTGTTTATGGATGCACCAAAGATTGGGAAGGACCCTTCTCCAGACTTGTCTTAA 867 0.4418 MAGDMHQPQPSLGRTFPPNSEDFSTFFNQLLHNPPPLGMDPNHSASDFTPHNNTNNPVPSSPSTFHFSHPIPATDANTFKQHTSNHNPDFTSSAEKSVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGFSLHPMSLPGEQRPMIMPQTGLNLDESDGLQNSTSAIASSSKEENLIRHALSFPKQCSISDQSVVLPSVTRLATSNAPSTFHPSIKDTLYDSMPQLFMDAPKIGKDPSPDLS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00272 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Phco2g00272 288 MobiDBLite consensus disorder prediction 1 127 - -
Phco2g00272 288 CDD bHLH_AtPIF_like 115 177 IPR047265 -
Phco2g00272 288 Gene3D - 110 174 IPR036638 GO:0046983
Phco2g00272 288 MobiDBLite consensus disorder prediction 113 127 - -
Phco2g00272 288 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 260 IPR031066 -
Phco2g00272 288 SMART finulus 121 170 IPR011598 GO:0046983
Phco2g00272 288 MobiDBLite consensus disorder prediction 12 31 - -
Phco2g00272 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 175 IPR036638 GO:0046983
Phco2g00272 288 FunFam Basic helix-loop-helix transcription factor 110 173 - -
Phco2g00272 288 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Phco2g00272 288 MobiDBLite consensus disorder prediction 45 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00272 Phco-Chr2 2158296 2161356 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g00272 HLH 1.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00272 2 2158296 2161356 Phco2g00272 2 2158296 2161356 ECH