Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00269 ATGGCTCTTCTACTTGACAACTGTGAAAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTGGACGACCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGACGACGCCACCTTCGTTGTTTGGCGCCCCCCAGAGTTTGCTAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCAAGCTTTGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGGTGGGAGTTCGCAAATGAGTTCTTCAAGAAAGGAGAGAAGCAGTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCAGCAACAAGTGCAAGGCATGCACCATCATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGTGTGTCCCCTCCCCATGACTCGGACGAGTTAGCCAATTGGTGCGACTCGCCCCCAGGAGGAGTTACAAGTGGAAACAACATCATCAACAACAACAATAACACCAACAGCTACAACACTGTCACTGCACTTTCTGAGGACAACGAGAGACTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCCGTGGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAGTAACAGCAACAACAGCAACAGCAAATCATCACAACCCTCTCACATAAATAATAACCTGTCAACAGTTCGGATACCGGTGAAACAGTTTGTGGGATGTTATTCAAACAACACTAAGCAAGCGCGTGCTGTGAACTCTCCAACAAACAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAAGTTCAGAAACAAATAAGTCGCGTTTGGTGGTGGAAAATGATGAATTGTTTGGCTTGAATCTCATGTCCCCTTCATCTTGTTTGTTATAG 1080 0.463 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKQLLCEIHRRKTHQQHQQQVQGMHHHQFGLNVPPFFPFHNRLSVSPPHDSDELANWCDSPPGGVTSGNNIINNNNNTNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCSNSNNSNSKSSQPSHINNNLSTVRIPVKQFVGCYSNNTKQARAVNSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNNLQSSETNKSRLVVENDELFGLNLMSPSSCLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00269 359 Gene3D - 17 116 IPR036388 -
Phco2g00269 359 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 291 IPR027725 -
Phco2g00269 359 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 FunFam Heat stress transcription factor B-4 17 115 - -
Phco2g00269 359 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00269 359 Coils Coil 187 207 - -
Phco2g00269 359 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00269 Phco-Chr2 2121964 2123591 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco2g00269 HSF_DNA-bind 6.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00269 2 2121964 2123591 Phco2g00269 2 2121964 2123591 ECH
Phco2g00269 2 2121964 2123591 Phco7g00461 7 3316333 3317521 PCT