Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00259 ATGGATGGAATTTTCGCTTACATCATTGTCATTTTGCTTACCTTATTTTCATTCATGTTCTTACCAAAACTGAACAGAAGAAAATCTCAGAAACAAACAACCGCAAAGCTCCCCCCAGGTTCAATGGGATGGCCTTACATAGGAGAAACCCTCCAACTCTACTCCCAAGACCCAAATGTCTACTTTTCCACCAAACACAAAAGGTTTGGTGAAATATTTAAGACCAACATCCTGGGTTGTCCCTGTGTGATGCTGATCAGCCCTGAGGCTGCACGCTTTGTGCTGGTGACTCAAGCTCACTTGTTCAAACCAACATACCCGAAAAGCAAAGAGCGTTTGATTGGTCCTTTTGCTTTGTTTTTCCACCAGGGAGACTACCACACTCGCCTGAGGAAGCTTGTTCAGAGGTCACTTTCTTTTGAAGCACTTCGCAACTTGGTGCCCCATATTGAAGCCTTAGTGTTATCTGGCATGAACTCTTGGGGTGATGGCCAAGTCATTAACATGTTTAAGGAAATGAAAAGGATTTCTTTTGAAGTTGGAATCCTCACAACTTTTGGCCATCTAGAGCCACGTTCGAGGGAGGAGCTAAAGAAGAATTACCGTATTGTGGATGCTGGTTACAATTCCTTCCCAACTTGCATTCCAGGAACCCAGTACAAAAAAGCACTGCTGGCTAGAAAGAGACTTGGGAAGATTATAAGTGATATAATTTGTGAGAGGAAGGAGAAGAAGTTGGTCGAAAGGGATCTGTTGAGTTGTCTATTGAATTGGAAAGGTGAAGGAGGAGAAGTGTTATCTGATGACCAAATTGCAGATAACATTATTGGGGTGCTTTTTGCTGCTCAGGACACCACAGCTAGTGCCATGACATGGGTTGTAAAGTATCTGCATGATGAACCGAAACTTCTGGAGTCAGTAAAGGCAGAGCAGAAGGCAATTCACAAGTCTAATGAAGGTAATATACCACTGAGTTGGGGTCAGACTAGAAACATGAGAATTACTCACAAGGTTGTGTTAGAGAGTTTGAGAATGGCAAGCATTATTTCATTCCCTTTCAGAGAAGCAATAGCTGATGTGGAGTACAAGGGATTCTTAATACCAAAAGGGTGGAAAGCGATGCCTCTGTTCAGAAATATTCACCACAATCCTGAATATTTTCCAGAGCCTCAGAAGTTCAACCCTTCAAGATTTGAGGTGGCACCAAAGCCCAATACTTTTATGCCATTTGGAAGTGGAGTACATGCCTGCCCTGGCAATGAGCTTGCTAAGCTGGAGACACTGATTATGATCCATCATTTGGTCACCAAATTTAGGTGGGAAGTGGTAGGATCCAAGTGTGGAATTCAGTATGGTCCATTCCCCTTGCCACTGAATGGACTCCCAGCTAGGTGTTGGAGAGAATCTACCAGCTAG 1416 0.4343 MDGIFAYIIVILLTLFSFMFLPKLNRRKSQKQTTAKLPPGSMGWPYIGETLQLYSQDPNVYFSTKHKRFGEIFKTNILGCPCVMLISPEAARFVLVTQAHLFKPTYPKSKERLIGPFALFFHQGDYHTRLRKLVQRSLSFEALRNLVPHIEALVLSGMNSWGDGQVINMFKEMKRISFEVGILTTFGHLEPRSREELKKNYRIVDAGYNSFPTCIPGTQYKKALLARKRLGKIISDIICERKEKKLVERDLLSCLLNWKGEGGEVLSDDQIADNIIGVLFAAQDTTASAMTWVVKYLHDEPKLLESVKAEQKAIHKSNEGNIPLSWGQTRNMRITHKVVLESLRMASIISFPFREAIADVEYKGFLIPKGWKAMPLFRNIHHNPEYFPEPQKFNPSRFEVAPKPNTFMPFGSGVHACPGNELAKLETLIMIHHLVTKFRWEVVGSKCGIQYGPFPLPLNGLPARCWRESTS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00259 471 CDD CYP90-like 67 464 - -
Phco2g00259 471 PRINTS E-class P450 group I signature 290 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 270 287 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Phco2g00259 471 PANTHER CYTOCHROME P450 26 34 453 - -
Phco2g00259 471 Gene3D Cytochrome P450 26 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 Pfam Cytochrome P450 38 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS P450 superfamily signature 281 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Phco2g00259 471 FunFam Abscisic acid 8 27 467 - -
Phco2g00259 471 SUPERFAMILY Cytochrome P450 35 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00259 Phco-Chr2 1994076 1998579 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00259 2 1994076 1998579 Phco8g00065 8 569650 572405 ECH
Phco2g00259 2 1994076 1998579 Phco2g00259 2 1994076 1998579 ECH