Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00230 ATGCAACAATCGAACGGCTCCGATTCCTCGTTGCAGTCGCAGTCCACGGAGCAGAACGTTCCGCGGCAGCCGGCAGCCTCTCCGGCGGTAGCGCGGCCGCAGCAGTGGCTTCCGATGCAGTATCCGGCGGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGTACGTGCCTTTCCACCACCACCAGTACGCACCGCCGCACGTCCCGCACCAGCACCAGCAGCACCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAACAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTCTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATATTTGTAGGAGATTTAGCTGCAGATGTTACGGATAATTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTCGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAATGAGAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATATTTGTTGGAGGACTGGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTCCAGTTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGTACAACAATTGGAAAACAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGTTACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGAGCTTACCCTCTTTATGGTGCCCACCAACAACAAGTAAGCTGA 1257 0.498 MQQSNGSDSSLQSQSTEQNVPRQPAASPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPYVPFHHHQYAPPHVPHQHQQHQNGSSGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDNLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00230 418 SMART rrm1_1 289 356 IPR000504 GO:0003723
Phco2g00230 418 SMART rrm1_1 184 258 IPR000504 GO:0003723
Phco2g00230 418 SMART rrm1_1 91 166 IPR000504 GO:0003723
Phco2g00230 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Phco2g00230 418 FunFam Polyadenylate-binding protein RBP47B 171 273 - -
Phco2g00230 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Phco2g00230 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Phco2g00230 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Phco2g00230 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Phco2g00230 418 SUPERFAMILY RNA-binding domain, RBD 55 168 IPR035979 GO:0003676
Phco2g00230 418 MobiDBLite consensus disorder prediction 68 88 - -
Phco2g00230 418 FunFam Polyadenylate-binding protein RBP47 274 390 - -
Phco2g00230 418 Gene3D - 89 169 IPR012677 -
Phco2g00230 418 MobiDBLite consensus disorder prediction 1 31 - -
Phco2g00230 418 CDD RRM3_NGR1_NAM8_like 287 358 - -
Phco2g00230 418 SUPERFAMILY RNA-binding domain, RBD 182 360 IPR035979 GO:0003676
Phco2g00230 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Phco2g00230 418 Gene3D - 265 366 IPR012677 -
Phco2g00230 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 364 - -
Phco2g00230 418 FunFam Polyadenylate-binding protein RBP47C isoform A 89 169 - -
Phco2g00230 418 Gene3D - 182 258 IPR012677 -
Phco2g00230 418 MobiDBLite consensus disorder prediction 263 294 - -
Phco2g00230 418 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g00230 418 CDD RRM2_SECp43_like 182 261 - -
Phco2g00230 418 CDD RRM1_SECp43_like 91 171 - -
Phco2g00230 418 MobiDBLite consensus disorder prediction 258 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00230 Phco-Chr2 1786592 1790205 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00230 2 1786592 1790205 Phco2g00230 2 1786592 1790205 ECH
Phco2g00230 2 1786592 1790205 Phco7g00433 7 3083790 3088894 PCT