Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00225 ATGAAAAAGGACTTGGGCCTCACTGGAATCTCTTACAAGTTGTGTGTTACATGGACCAGTGGAATAAAAGGGTCATGGAGTGTGGAAGAAGATAGGGTTCTCACTGAGTTTGTGGAGGCCCATGGGCCGAGAAACTGGGCCTTGATAAGCCGACACATAAAGGATCGCTCTGGGAAGTTGTGTAGGTTTCGATGGTGCAACCAGCTGGAGTACCGACCCTTCACCACACGCGAGAACTCGGTTATCTTGCACGCGCACGATCGGTTAGGGAACAAGTGGGCCACCGTTGTAAGAATGTTTCCGGACCGGACCGATAACACCGTTAAGAACCATTGGAATGCCACGCTCAAGCGCATGGTCTCCCAACAATGTCAACAATGTCATTTTGGAGATGAACCGTTGACTCTAGCGCTGCCGAAGAGTGGTTGCAGCGATTCGACAACGGGGTTTCGGAAAGTGAGAGATCTTACTCAGTTTTTCGACAACTTGGGCTCTAACAAGGAATTATTCAAATACTAA 519 0.4894 MKKDLGLTGISYKLCVTWTSGIKGSWSVEEDRVLTEFVEAHGPRNWALISRHIKDRSGKLCRFRWCNQLEYRPFTTRENSVILHAHDRLGNKWATVVRMFPDRTDNTVKNHWNATLKRMVSQQCQQCHFGDEPLTLALPKSGCSDSTTGFRKVRDLTQFFDNLGSNKELFKY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00225 172 CDD SANT 73 116 IPR001005 -
Phco2g00225 172 PANTHER MYB PROTEIN-RELATED 23 126 - -
Phco2g00225 172 Pfam Myb-like DNA-binding domain 23 69 IPR001005 -
Phco2g00225 172 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Phco2g00225 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 73 IPR017930 -
Phco2g00225 172 FunFam MYB transcription factor 23 74 - -
Phco2g00225 172 Gene3D - 22 72 - -
Phco2g00225 172 SMART sant 22 71 IPR001005 -
Phco2g00225 172 SMART sant 72 118 IPR001005 -
Phco2g00225 172 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Phco2g00225 172 SUPERFAMILY Homeodomain-like 22 112 IPR009057 -
Phco2g00225 172 CDD SANT 25 67 IPR001005 -
Phco2g00225 172 ProSiteProfiles Myb-like domain profile. 73 116 IPR001005 -
Phco2g00225 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 120 IPR017930 -
Phco2g00225 172 Gene3D - 73 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00225 Phco-Chr2 1747659 1750466 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00225 Myb_DNA-binding 8.8e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00225 2 1747659 1750466 Phco2g00225 2 1747659 1750466 ECH
Phco2g00225 2 1747659 1750466 Phco7g00427 7 3027898 3028557 PCT