Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00216 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTTTTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCGGATGGGTTTGTGTGTCGCATGGAGGGAAGGACATACGGGTCATTTTCATTGATGGGTCCCAGTGGAAATGTATGGACAGTGCAATTACTTAAGCATGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATAGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCACCTGCATTTTACCGTTCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCATTTATTTCTGAATGCAGTCAAAGCTCGAGTGACTTTGAGGAAATTACGAGACAGAAAAGAGGTACGAAGGAGAGTTCATCTTTGGACATTGCATTTGATGGTGTTTCAAAGAAAATGAGAGGTTGTAAATATGAGAATCAGGAACATGAACCAGGTTTTGTAGGTAAAGAACTATTGCGTCATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAGACTGAAGAAACCTCTAAAGCGTGTTTGGCTAATGATGCCCTTGTGCCTTTTCACATGGACAATAGAAATGAAGAGGCTGCCATCCTGTATAGAAGTGGAAAGGAAGATGGTAGCTATTTTCTTGGCGGAGTTTCATTATCAAATGTATCAGCGCAAGATGAGAAAAAAGTTGCTCAGTCATTTACTTCCAATTATCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATTCCATATCAGTTTTCAATGGCACACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGCATTACGGTTGGAGATATCTGTATTTTTGAGCTTGTGCACAAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAATGATGGGCTAGACTGCCAGGTTGGAAGAGTGAATGCAGGACATGTTGGAACTCCCAGATATATGCCAACGAATGCTAAAGTCAACTCAAAGTGCATAAGAAAAGTTGATCTATCAAATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATGCTTCCAAGAACATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGCTGGCTACTCCGAGAAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCTAGCTTTGTTAAAATCATGAAAAAGTTCAATGTCAGTGGGTCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTACGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGACAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTGGTTACTCAATCTGAGATGCAGGTGTATATATCTGGGGTCGGAAAGGAAGGGCATGATCATCAAAATGGGCACTTAAAACTTGATAGATTAGCTAACGTTCCATCTACTTGCTAA 1782 0.4074 MGCDCGGKLNLRKPHFYEVFSSAFSSHRLKIPDGFVCRMEGRTYGSFSLMGPSGNVWTVQLLKHDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHFTVQVFDKDACEKEAAFISECSQSSSDFEEITRQKRGTKESSSLDIAFDGVSKKMRGCKYENQEHEPGFVGKELLRHEVVRPIRMFRETEETSKACLANDALVPFHMDNRNEEAAILYRSGKEDGSYFLGGVSLSNVSAQDEKKVAQSFTSNYPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSITVGDICIFELVHKCELRVHIAGVGNDGLDCQVGRVNAGHVGTPRYMPTNAKVNSKCIRKVDLSNKKWPKIGQETVLSIDLKKSGRASNASKNMGLCPQSKAAHKKLATPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQSEMQVYISGVGKEGHDHQNGHLKLDRLANVPSTC 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00216 593 CDD B3_DNA 472 566 IPR003340 GO:0003677
Phco2g00216 593 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Phco2g00216 593 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 350 IPR044837 -
Phco2g00216 593 CDD B3_DNA 252 346 IPR003340 GO:0003677
Phco2g00216 593 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Phco2g00216 593 ProSiteProfiles B3 DNA-binding domain profile. 474 570 IPR003340 GO:0003677
Phco2g00216 593 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Phco2g00216 593 Gene3D - 8 109 IPR015300 -
Phco2g00216 593 CDD B3_DNA 14 105 IPR003340 GO:0003677
Phco2g00216 593 Gene3D - 459 569 IPR015300 -
Phco2g00216 593 Gene3D - 234 349 IPR015300 -
Phco2g00216 593 Pfam B3 DNA binding domain 474 563 IPR003340 GO:0003677
Phco2g00216 593 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Phco2g00216 593 Pfam B3 DNA binding domain 20 106 IPR003340 GO:0003677
Phco2g00216 593 SMART B3_2 254 350 IPR003340 GO:0003677
Phco2g00216 593 SMART B3_2 474 570 IPR003340 GO:0003677
Phco2g00216 593 SMART B3_2 20 107 IPR003340 GO:0003677
Phco2g00216 593 SUPERFAMILY DNA-binding pseudobarrel domain 467 568 IPR015300 -
Phco2g00216 593 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco2g00216 B3 3.3e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00216 2 1694210 1697580 Phco2g00216 2 1694210 1697580 ECH