Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00209 ATGGCCAAATCTAGCGCCGACGATGGCGAGCTCCGGCGAGCTTGCGACGCCGCAATTGAGGATCCGAAGCAGAAGATCGTGATGGCGCTTCGCGTGACCAAGAGTCACGGCATCTTAGGAAAATCGTCCAAGCTCGGTCGCCAAATGGCCAAGCCTAGGGTTCTCGCTCTCTCCACGAAATCGAAGGGTCAGAGGACATCGCCTTTTCTTCGTGTATTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAGCTATACAAGCTAAAGCACCTGTCAAAAGTGGAAGTTGTAGCAAATGATCCCAGTGGATGTACATTTACTCTGGGATTTGATAACCTTAGAAGCCAGAGTGTCGCTCCTCCTCAATGGTCCATGCGCAATATTGATGACAGGAATCGTCTCCTTCTTTGCATCTTGAACATATGCAAAGATGTTTTGGGTCGCCTTCCAAAGGTTGTCGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCCCCTGTTTCTGCTCAGAATAAAGTGCGAGATGGTGGTCCTGTTGCATCTGTTGTGAGGGAGACAGAATTGAAAGTTAACGTTGAAAAGGAACTTGTTTCCCAGGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAAGAATTTTCTGAAAGGTTGAAGAGGGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATTCTCTTTTAGAAAGTGAACCTTTGATGGATGAGGTTTTGCAGGGGCTTGAAGCAGCAACCAGTGTTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATTTAAAACTCCGGCACATGAGGGAGGATATTGCATCAATAGAAACCCGCAATAATAATCTAGAAATGCAGTCAGTTAATAACAAATCTCTCATTGAAGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCTGCAAGTTTGACAGGAGGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTTGAAGCATGTGAATGGTTGACTAGTGCCTTGCGTGGCCTTGAAGCACCTAATCTAGATCCTAGTTATGCAAACATGAGAGCTGTTAAAGAAAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCATCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGCTACTTTTCACAGCGAGGACAGTTAAAGAGGCCCGATCATGCTGACTTGCGGTACAAATGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTTGATAAGAATTGTTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAGGCCCGTGAGTTTGCCAATGAGCTTCGTGCTAGTACTAAAGCATCTAGAAATCCAACTGTTTGGCTCGAAGGTTCTGCAGGTTCTGGTCAGAATGTGAACGCTACTGATACTTCCACAGTCTCCGATGCTTATGCAAAGATGCTTACGATTTTTATCCCTCTTCTGGTGGATGAGAGTTCTTTTTTTGCACACTTTATGTGCTTTGAAGTTCCTACACTTGTTCCTCCTGGAGGTGTTGTTAATGGAAACAAAACTGGGTATGATGATGATGATGACGATTTGGGAATTATGGATATTGATGAGAATGACAGCAAATCTGGTAAAACTTCTGCCGAGCTTGCAGCTTTGAATAAATCACTTAAGGATTTACTTGATGGAATACAAGAAGACTTTTATGCTGTTGTGGATTGGGCGTACAAGATTGATCCTCTACGCTGTATATCAATGCATGGAATAACAGAGCGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTACTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGGAATGTTCGCCAAATGGGTGTTCTCTCCTACATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCGTATACAAAATTTGTTAGCATAATGTTTGCAACTTTAGAAAAAATTGCACAAACAGAACCAAAGCATGCAGATATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAGCAAGCTTGTACACGTCATATTAGCATGATAATCTACTATCAATTTGAACGACTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTCCACCTGAAGAGATTCCTTTTCAGCTTGGACTGTCAAAAATGGATCTTCGGAAGATGTTAAAATCCAGTTTATCTGGGGTTGACAAGTCCATTGCTACGATGTATAAGAAACTGCAAAAGAACTTGACTTCAGAGGAACTATTACCCTCTTTATGGGACAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCTAAGATTTACCCTACGGAGTCAATCCCATCAGTTGCAGAGATGAGAGACCTTTTAGCTTCCATGTAG 2655 0.4286 MAKSSADDGELRRACDAAIEDPKQKIVMALRVTKSHGILGKSSKLGRQMAKPRVLALSTKSKGQRTSPFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVANDPSGCTFTLGFDNLRSQSVAPPQWSMRNIDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPPVSAQNKVRDGGPVASVVRETELKVNVEKELVSQAEEEDMEALLGTYVMGIGEAEEFSERLKRELQALEAANVHSLLESEPLMDEVLQGLEAATSVVEDMDEWLSIFNLKLRHMREDIASIETRNNNLEMQSVNNKSLIEELDKLLERLRVPSEYAASLTGGSFDEARMLQNVEACEWLTSALRGLEAPNLDPSYANMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSAGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKTGYDDDDDDLGIMDIDENDSKSGKTSAELAALNKSLKDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRDLLRDLESRISMQFNRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTEPKHADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVPPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIATMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPTESIPSVAEMRDLLASM 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00209 884 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Phco2g00209 884 Coils Coil 221 248 - -
Phco2g00209 884 Coils Coil 188 208 - -
Phco2g00209 884 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Phco2g00209 884 Coils Coil 281 318 - -
Phco2g00209 884 Pfam Exocyst complex component Sec3 579 867 IPR019160 GO:0000145|GO:0006887
Phco2g00209 884 Pfam Exocyst complex component Sec3 224 483 IPR019160 GO:0000145|GO:0006887
Phco2g00209 884 PANTHER SEC3/SYNTAXIN-RELATED 49 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00209 Phco-Chr2 1601194 1616321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00209 2 1601194 1616321 Phco2g00209 2 1601194 1616321 ECH
Phco2g00209 2 1601194 1616321 Phco7g00405 7 2861557 2880573 PCT