Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00207 ATGTTATGGGTATCAGGAGGTGTTTTGATGCTGCACACATTTTTTAGTTGGCTTCTTATACTGAAGCTGGGGTGGGGTCTAATTGGAGCAGCAATTACTCTTAACACATCATGGTGGTTGATTGTGATTGCACAATTGTTGTACATTTTCATCACAAAGTCAGATGGAGCATGGAGTGGATTCACATGGCTAGCATTTGTGGACTTGTTTGGCTTTGTAAAGCTTTCTCTGGCTTCAGCTGTTATGTTATGCTTGGAGTTTTGGTATTTGATGATATTGGTGGTGATAACAGGGCGTTTAGAAAATCCTCTGGTACCTGTTGATGCCATATCTATCTGTATGAACATAAATGGATGGGATGCAATGATTGCAATTGGGTTCAATGCTGCTATAAGTGTGAGAGTATCAAATGAACTTGGTGCTGGTGATTTCAAGGCTGCGAGGTTTTCTGTGTGGGTGGTTTCCATCACATCAGTGGCCATAGGTGTTGTGGTCATGATCGTAGTGTTGTCAACAAAGGATTACTTTCCCTACTTGTTTACCTCCACCACTGCAGTTGCCATTGAAACAACTAAGCTTGCTGGTTTGCTCGGTGTCACTGTGCTTCTAAACAGCCTTCAGCCAGTCCTATCTGGTGTTGCTGTTGGAGCTGGTTGGCAATCTCTAGTAGCATACATCAACATTGGATGCTATTATGTATTTGGATTACCAGCAGGGATAATCTTGGGATTTGTACTTGATTTTGGAGTTGAGGGTATTTGGTCAGGGATGATTGGAGGCATAGTTTTGCAAACCACAATCCTTGTAATAGTCACTTCATTAACCAACTGGAAAAAAGAGGCTGAAGAAGCAGGAAGTCGTGTGAGAAAGCTTGCATTTGCCAAGGCAGTGGAAATGGCGATTTCCCTTTCTGCTTTGACGACTTCCCTCTCTTCACTCTCTTTCTCTTCCCACGTTTCTCAGAGGCCCAACACTCTCTCCTTCGCCACAACCCTCTCCCTCTCGCGCTTCCCCAAACCACCGTCCCTCACCGTCTCCGCCACCGCGCTCGCCGAACCAGAAACCGAAGACCTCAAGAAGTTCGTCAAATCGAGGCTTCCTGGTGGATTCGCCGCGCAGACAATCATAGGCACGGGTCGCCGTAAGAGTGCCATCGCTCGCGTAGTTCTCCAGGAAGGAACCGGCAAATTCATCATCAATTACCGCGACGCTAAGGAATATCTTCAAGGAAATCCGTTGTGGCTTCAATACATTAAGGTTCCTTTGATAACTTTGGGATATGAAAGTAGTTATGATGTGTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCCCGTGCCTTGCTGAAGGTAAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACCAGAGATTCCAGAGTTGTTGAGAGGAAGAAAGTTGGTTTGAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAACGTTGA 1503 0.4564 MLWVSGGVLMLHTFFSWLLILKLGWGLIGAAITLNTSWWLIVIAQLLYIFITKSDGAWSGFTWLAFVDLFGFVKLSLASAVMLCLEFWYLMILVVITGRLENPLVPVDAISICMNINGWDAMIAIGFNAAISVRVSNELGAGDFKAARFSVWVVSITSVAIGVVVMIVVLSTKDYFPYLFTSTTAVAIETTKLAGLLGVTVLLNSLQPVLSGVAVGAGWQSLVAYINIGCYYVFGLPAGIILGFVLDFGVEGIWSGMIGGIVLQTTILVIVTSLTNWKKEAEEAGSRVRKLAFAKAVEMAISLSALTTSLSSLSFSSHVSQRPNTLSFATTLSLSRFPKPPSLTVSATALAEPETEDLKKFVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00207 500 ProSitePatterns Ribosomal protein S9 signature. 439 457 IPR020574 GO:0003735|GO:0005840|GO:0006412
Phco2g00207 500 FunFam 30S ribosomal protein S9 370 500 - -
Phco2g00207 500 CDD MATE_eukaryotic 1 283 IPR045069 GO:0042910|GO:1990961
Phco2g00207 500 Gene3D - 366 500 IPR014721 -
Phco2g00207 500 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 277 - -
Phco2g00207 500 Hamap 30S ribosomal protein S9 [rpsI]. 370 500 IPR023035 -
Phco2g00207 500 Pfam Ribosomal protein S9/S16 379 500 IPR000754 GO:0003735|GO:0005840|GO:0006412
Phco2g00207 500 Pfam MatE 79 239 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco2g00207 500 NCBIfam MATE family efflux transporter 9 254 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco2g00207 500 SUPERFAMILY Ribosomal protein S5 domain 2-like 374 500 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00207 Phco-Chr2 1577949 1585319 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00207 2 1577949 1585319 Phco2g00207 2 1577949 1585319 ECH