Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00203 ATGGGTTGGCTTAGCAGAATATTTAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATTTGCCATCGACTTCTGGGGTAACAACAAATGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCTCTGGCCGAAGAGAGCGAGAAAACAAACATTGCAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCTTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATATTGAGATTGGTTATGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTCCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTCATGCTGATATACAGAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCGGAGGAGCTCAGCACTTTCTCGAGAAGACCTAGATTTGGGACAGGAAATGGAGCAATGGACATGAGAGCACAGCCATACAGGATGACTCCACATTGTGATGTGACAGCTATTCTCATTTTATATGGTCTTCCAAGATTGCTTACTGGATCGATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTACTTCTGCATCAGGCAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACACTCATCTAAAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAAGACCCTTCACCACATCAGGATGACGGGGACGTTTCCATTTTAA 1428 0.437 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGVTTNDVWNQNENEDIDRAIALSLAEESEKTNIANDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYIEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESQEAGYIPLKDGRKLCLECLDSAIMDTNECQPLHADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGTGNGAMDMRAQPYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELTSASGSNFVSASSSSASHSSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQKTLHHIRMTGTFPF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00203 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 196 - -
Phco2g00203 475 Coils Coil 57 87 - -
Phco2g00203 475 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Phco2g00203 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Phco2g00203 475 SMART lim_4 114 166 IPR001781 -
Phco2g00203 475 Pfam LIM domain 115 169 IPR001781 -
Phco2g00203 475 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Phco2g00203 475 Gene3D Cysteine Rich Protein 109 188 - -
Phco2g00203 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
Phco2g00203 475 CDD LIM_DA1 115 167 - -
Phco2g00203 475 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Phco2g00203 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Phco2g00203 475 SMART uim 44 63 IPR003903 -
Phco2g00203 475 SMART uim 75 94 IPR003903 -
Phco2g00203 475 FunFam Protein DA1-related 1 109 168 - -
Phco2g00203 475 Pfam Protein DA1 265 470 IPR022087 -
Phco2g00203 475 Pfam Ubiquitin interaction motif 75 88 IPR003903 -
Phco2g00203 475 Pfam Ubiquitin interaction motif 45 59 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00203 Phco-Chr2 1545554 1551049 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco2g00203 DA1-like 9.8e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00203 2 1545554 1551049 Phco2g00203 2 1545554 1551049 ECH