Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00198 ATGGCCATAACCTCTCTACTCTTCCACCTCCTCCCCTTTCTCTTATTAGCAAAGCGTTTTGATTTTTATAATTATTTTTTATTAATGCTGAATTGTAAATTTTCAGGTAATGTAGCATCTGACACGGTGTTTTATCTGGAGAATCATTGCAGTCACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGCCGCCGTTCTCGGTTCTGGCGGTTTTGCCCTGTCACCTGGTTCTTCGGTCCACTTCACAGCGCCGTCCGGCTGGTCCGGCCGCTTCTGGGGCCGGACCGGCTGCACCTTCGATGAATCCGGCGTCGGGAATTGCGCCACTGGAGACTGCGCCGGAGGCTTGAAATGCACCGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACTACCGGAAGCTCCGGCAACGGCAACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACCGGGGGAACCGGTGACTGCAGGTACGCGGGTTGTGTGGCGGATCTCAACGCCGCGTGTCCGACGGAGCTTCAGGTTAGAGACGGCGGCGGCGCGGTTGTGGCGTGCAAGAGCGCGTGCGCGGCGTTTAACACGGCGGAATTTTGCTGCACCGGCGATCACGGGACGCCGCAAACGTGTTCGCCGACACATTATTCGGAGATTTTCAAGAGTGCGTGTCCAACAGCTTATAGTTACGCATACGATGATGCTTCCAGCACTTTCACTTGCTCAGATTCTGATTATGTTATCACTTTCTGTTCCATGGGATCATCATCTTAA 804 0.5498 MAITSLLFHLLPFLLLAKRFDFYNYFLLMLNCKFSGNVASDTVFYLENHCSHTVWPGTLSGNGAAVLGSGGFALSPGSSVHFTAPSGWSGRFWGRTGCTFDESGVGNCATGDCAGGLKCTGGGVPPVTLVEFTTGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCRYAGCVADLNAACPTELQVRDGGGAVVACKSACAAFNTAEFCCTGDHGTPQTCSPTHYSEIFKSACPTAYSYAYDDASSTFTCSDSDYVITFCSMGSSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00198 267 ProSitePatterns Thaumatin family signature. 104 119 IPR017949 -
Phco2g00198 267 SUPERFAMILY Osmotin, thaumatin-like protein 43 261 IPR037176 -
Phco2g00198 267 CDD TLP-PA 43 261 - -
Phco2g00198 267 SMART tha2 44 262 IPR001938 -
Phco2g00198 267 ProSiteProfiles Thaumatin family profile. 41 261 IPR001938 -
Phco2g00198 267 PRINTS Pathogenesis-related protein signature 43 55 IPR001938 -
Phco2g00198 267 PRINTS Pathogenesis-related protein signature 252 261 IPR001938 -
Phco2g00198 267 PRINTS Pathogenesis-related protein signature 104 133 IPR001938 -
Phco2g00198 267 PRINTS Pathogenesis-related protein signature 91 102 IPR001938 -
Phco2g00198 267 FunFam Thaumatin-like protein 1a 42 262 - -
Phco2g00198 267 Pfam Thaumatin family 48 261 IPR001938 -
Phco2g00198 267 Gene3D Thaumatin 43 261 IPR037176 -
Phco2g00198 267 PIRSF PR5 14 267 IPR001938 -
Phco2g00198 267 PANTHER OS03G0233200 PROTEIN 29 261 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00198 Phco-Chr2 1515905 1517039 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00198 2 1515905 1517039 Phco2g00198 2 1515905 1517039 ECH