Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00196 ATGGAGTCCATGGTTCGGTGCTGTAGTTTGCGCGAGCTATTCGGATTTCGTTGCAACCTTCGATTCGCCGTCGTTGTTTTTGAGATTGTATTGATATTGGCATGGTTGGAAGTCTATAATGCAAAGCTCCCAGAACACCAATTTTATTGGGGAGGTTTGGAAGGGAGGAGTGAGAACATTGCCTCACACTCTTGCATACACGACCAGATACTTGAGCAGAGAAAGCAACCTGGTCGCAAGGTGTATTCAGTTACCCCACAGGTTTACAAGCCTGGTCTTTCGAAGCACCTCCAGCTTAAAGGTAGAGCATTACTTGGTATATCAACACCATCAGAGCTTCTAGGTGTTGAAAAACAACCTATTAGGATATATCTAAATTATGATGCAGTTGGTCACTCCCCTGACAGGGATTGCCAAAAGATTGGTGATATTGTCAAGCTAGGGGAGCCTCCCATGACTTCTATTCCTGGTTTGCCTTCTTGTAATCCTCTTGCTGATCCTCCAGTCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCATGAGGCATTAGGTCAGACAGCTGACTGGTTTAGTAGGGTCTTGTCTGTTGAGCCTGTTAAGGGGAACTTGCGATTAAGTGGATACTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCTCATGCATATGTTGAAGAGGGAGTCTCTGATGCCGACTTGGTTCTCTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGATCAATGGGGTCGTGCTATAGCCGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCAGAGACTTTGCTATCAGCTACTCTGATACACGAGGTTATGCATGTTCTTGGTTTCGATCCTCATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGACGTGACAAGGTTACTGAACGAGTTATGGATGAAAAGATTGGGCGGATGGTGACACGTGTGGTGCTTCCACGTGTTGTCATGCATTCTCGGCATCATTATTTGGCATTTTCGGGAAATTTTACTGGCTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTATTAGAAGACAGTGGATGGTACAAAGCCAATTATAGCATGGCAGATCAACTTGATTGGGGTCGGAACCAGGGTACTGAGTTTGTTACCTCCCCTTGCAATGTATGGAAGGGGGCCTATCATTGCAACACAACACAATTCTCTGGTTGTACATATAACAGAGAGGCAGAGGGTTACTGCCCAATTCTAACCTACAGTGGAGATCTTCCTCAGTGGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGGCAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGACGGATCATGTACAGACACTAGCAGTGCACGGGCACCTGATAGCATGCTAGGTGAAGTTCGAGGAAGTAACTCTAGGTGTATGGCTTCATCGCTAGTGCGTACAGGATTTGTACGGGGTTCTCTGACCCAGGGAAATGGTTGTTATCAGCACAGGTGTATCAACAGTTCTTTAGAGGTTGCTGTGGATGGTGTCTGGAAAGTGTGCCCCCAGGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAGTCTGCCCTGCATATCATGAGCTCTGTAACACGGATCCAGTGGTCGTGTCTGGGCAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGTCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTCCTGTCCCAGCGATTGCACTGGCAAGGGCGTTTGCCTCACCAGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTTTGTGATGAGCAATGCAGTCTTCATGGTGGAGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATATACTTGCCAGAACAGCTCCAGGCTCCTCTCCAGTCTTTCAATTTGCAGAAATGTGCTGGGAAATGATATTTCCGGACAACATTGTGCACCCAGTGAACCTAGCATACTACAGCAACTAGAAGAAGTGGTTGTGATGCCCAACTACCATCGTTTATTCCCCGGCGGTGCTAGGAAACTATTTAATATATTTGGCAGTACGTACTGTGATGAGACAGCTAAAAGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCTGCATGTCAGGCTTATAATCTAGCATGTGGAGCTTCGCTGGACTGCGGTGACCAAACCCTTTTTAGCAGCGAGGGGGAGGGGGAGGATCAGTGCACTGGCTCTGGTGAGATGAAATTATCATGGTTTAATCGACTGAGAAATAGTTTTTCTTTGAGAAATAGTTCCTCAGAAGTAATATCTGTAAGATATAGGCAGCTTTAG 2586 0.459 MESMVRCCSLRELFGFRCNLRFAVVVFEIVLILAWLEVYNAKLPEHQFYWGGLEGRSENIASHSCIHDQILEQRKQPGRKVYSVTPQVYKPGLSKHLQLKGRALLGISTPSELLGVEKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPPMTSIPGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLHEALGQTADWFSRVLSVEPVKGNLRLSGYSACGQDGGVQLPHAYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRDKVTERVMDEKIGRMVTRVVLPRVVMHSRHHYLAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADQLDWGRNQGTEFVTSPCNVWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDSMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINSSLEVAVDGVWKVCPQAGGPIQFPGFNGELVCPAYHELCNTDPVVVSGQCPSACNFNGDCVDGRCHCFLGFHGHDCSRRSCPSDCTGKGVCLTSGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSRLLSSLSICRNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDETAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGEGEDQCTGSGEMKLSWFNRLRNSFSLRNSSSEVISVRYRQL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00196 861 SMART egf_5 639 668 IPR000742 -
Phco2g00196 861 SMART egf_5 608 636 IPR000742 -
Phco2g00196 861 FunFam Teneurin transmembrane protein 2 608 638 - -
Phco2g00196 861 Gene3D Leishmanolysin , domain 2 314 439 - -
Phco2g00196 861 ProSiteProfiles EGF-like domain profile. 636 668 IPR000742 -
Phco2g00196 861 FunFam leishmanolysin-like isoform X2 503 598 - -
Phco2g00196 861 ProSitePatterns EGF-like domain signature 2. 656 667 IPR000742 -
Phco2g00196 861 Pfam EGF-like domain 640 667 IPR013111 -
Phco2g00196 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 249 278 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Phco2g00196 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 402 431 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Phco2g00196 861 Pfam Leishmanolysin 175 600 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Phco2g00196 861 Gene3D Laminin 640 670 - -
Phco2g00196 861 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 117 602 - -
Phco2g00196 861 Gene3D - 116 304 - -
Phco2g00196 861 FunFam SD03917p 597 639 - -
Phco2g00196 861 Gene3D Leishmanolysin domain 3 443 501 - -
Phco2g00196 861 FunFam leishmanolysin-like peptidase isoform X2 442 501 - -
Phco2g00196 861 FunFam leishmanolysin-like peptidase isoform X2 315 439 - -
Phco2g00196 861 ProSitePatterns EGF-like domain signature 1. 656 667 IPR000742 -
Phco2g00196 861 Gene3D Leishmanolysin domain 4 503 596 - -
Phco2g00196 861 Gene3D - 597 639 - -
Phco2g00196 861 FunFam Peptidase M8, leishmanolysin 115 304 - -
Phco2g00196 861 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 58 821 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00196 Phco-Chr2 1501590 1510111 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00196 2 1501590 1510111 Phco2g00196 2 1501590 1510111 ECH
Phco2g00196 2 1501590 1510111 Phco7g00400 7 2823751 2831816 PCT