Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00167 ATGTCGATATCAAAATCACTATCCTCAGTTCCTGCGCGTCTCACTCTCCTCGCTCTCTTCTCCGCCACCACCTGCTATTGTCTCTATAAATCTCGTCGTTTAAGATACCTCAAACTATCCTCTAACCCTAACCCTAAACCTAAACCTAAACCTAAGATCATATTCCTTTCAGAAACCGGAACCTGCAAAACCCTCGTTCTCCGCCTCCACCGTCTCCTCGCCTCCAACGGCGTCGCATTCGACGTCGTCGATTCGCGGCACTACGAGCCCGAGGACCTCCCCAAGGAGACGCTCCTCCTACTCGTTGCCTCCACGTGGCAGGACGGCGCTCCCCCCGCTGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGAAGCCGCCGCCGATTTCCGCGCCGGCTCCCTCCTCCTTTCGAGCTGCCGTGTAGCCGTCTTTGGCGTCGGGAGCCGAGCCTACGGCGAGTCCTTCAACGCCGTCGCGAAGGGCCTCGCGACACACCTGAGGGCGCTCGGCGCCAAGGAGGTGGTTCCGCTTTGTGAAGGGGATGTTGATGGTGGTGACCTGGACAAGGTTTTCGATCGGTGGTGTGAGAAGGTGGTGACCGTTTTGAAAGGAGGTGGTGTTGCGGAGTGCGATGATGATGATAGTGGTGGTGCTGTGGAGTCTGGCGTCTATTCGAGTTCCGAAGAGGAGTCTGATGTGGAGAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCACGGCGGAAGACTGTGGCTAATGGGGAAGAGAGTAATGGGAAATTGAATGGCAGAAAAGAAATGGTGACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATCATTGGGTCGCATAGTGGTGTCAAGATTTGTAGATGGACCAAGGCGCAGCTTCGTGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATCGAGAGTCACAGATGCATGGAGACAACCCCTAGCTTGGCATGCGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAATGGCAGATGGATGATCCAATAGAGATTGTAAATTCTGCAATAGACCTCCATAAAAATATGGTTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGTCTCTCACCTCGTCATTGTGCATTATCTCTTGTTGGTGAACCTATAATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAATCGCTGAAACCTATTACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTATTTGGCGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTTTAAGGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTCTTTAGTATAGGAAATCCTGACTTTGTTGAAATCAAGGGAGTTACGTATTGTGGCTCGTCCACTACATCAAAACTTACAATGGAAAATGTCCCTTGGCATACTGATGTGAAAGCTTTTTCAGAGGCCCTTGCTTTGAAAAGCCAAGGAGAGTATGAAGTTGCATGCGAGCATGCTCACTCGTGCTGCGTCCTCTTAGCAAAAACTAATAAGTTCAAAATCGATGGCCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATTTGGTGGCATCTGGAAAAACTTTTGACAGCAGAGATTACATGACTGTCACACCATCCTGGGCCGTCTATGGATCGGATGAAGGTGGATTTGATCCAGGACAATTGAGATATAGGAAAGAGAGACATCACAAGTCAAGCCGCAAACAATCAGGTTAG 1938 0.4804 MSISKSLSSVPARLTLLALFSATTCYCLYKSRRLRYLKLSSNPNPKPKPKPKIIFLSETGTCKTLVLRLHRLLASNGVAFDVVDSRHYEPEDLPKETLLLLVASTWQDGAPPAASRFFATWLAEAAADFRAGSLLLSSCRVAVFGVGSRAYGESFNAVAKGLATHLRALGAKEVVPLCEGDVDGGDLDKVFDRWCEKVVTVLKGGGVAECDDDDSGGAVESGVYSSSEEESDVESEIVDLEDIAGKAPSRRKTVANGEESNGKLNGRKEMVTPVIRANLEKQGYKIIGSHSGVKICRWTKAQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHKNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALREKHQRTVYRLTLVKGWNTEDVDAYSKLFSIGNPDFVEIKGVTYCGSSTTSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFHDLVASGKTFDSRDYMTVTPSWAVYGSDEGGFDPGQLRYRKERHHKSSRKQSG 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00167 645 Pfam Radical SAM superfamily 326 505 IPR007197 GO:0003824|GO:0051536
Phco2g00167 645 Pfam Flavodoxin 53 194 IPR008254 GO:0010181
Phco2g00167 645 Gene3D Aldolase class I 255 585 IPR013785 -
Phco2g00167 645 PRINTS Flavodoxin signature 52 65 IPR001094 GO:0010181
Phco2g00167 645 PRINTS Flavodoxin signature 138 148 IPR001094 GO:0010181
Phco2g00167 645 PRINTS Flavodoxin signature 100 111 IPR001094 GO:0010181
Phco2g00167 645 PRINTS Flavodoxin signature 163 182 IPR001094 GO:0010181
Phco2g00167 645 SFLD tRNA wybutosine-synthesizing 266 577 IPR034556 GO:0008033|GO:0051539
Phco2g00167 645 SFLD Radical SAM 266 577 IPR007197 GO:0003824|GO:0051536
Phco2g00167 645 MobiDBLite consensus disorder prediction 622 645 - -
Phco2g00167 645 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 41 640 IPR034556 GO:0008033|GO:0051539
Phco2g00167 645 Pfam Wyosine base formation 510 573 IPR013917 -
Phco2g00167 645 ProSiteProfiles Flavodoxin-like domain profile. 51 199 IPR008254 GO:0010181
Phco2g00167 645 CDD Radical_SAM 327 503 - -
Phco2g00167 645 MobiDBLite consensus disorder prediction 248 267 - -
Phco2g00167 645 SUPERFAMILY Radical SAM enzymes 328 513 - -
Phco2g00167 645 SUPERFAMILY Flavoproteins 50 202 IPR029039 -
Phco2g00167 645 Gene3D - 31 207 IPR029039 -
Phco2g00167 645 ProSiteProfiles Radical SAM core domain profile. 315 558 IPR007197 GO:0003824|GO:0051536
Phco2g00167 645 MobiDBLite consensus disorder prediction 248 265 - -
Phco2g00167 645 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 258 587 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00167 2 1320041 1324494 Phco2g00167 2 1320041 1324494 ECH